View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17825_low_9 (Length: 218)
Name: NF17825_low_9
Description: NF17825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17825_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 30107381 - 30107260
Alignment:
| Q |
82 |
caacaatctccccaactccgacacaacaaacttaacacctcccccatccacatcatccccaaccaaaacctcaatctctccaaacccaacaacaacacca |
181 |
Q |
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| T |
30107381 |
caacaatctccccaactccgacacaacaaacttaatacatccaccatccacatcatccccaaccaaaacctcaatctctccaaacccaacaacaacacca |
30107282 |
T |
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| Q |
182 |
gcacccaaacatttcttcacct |
203 |
Q |
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|||||||||||||||| ||||| |
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| T |
30107281 |
gcacccaaacatttctccacct |
30107260 |
T |
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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 16865278 - 16865190
Alignment:
| Q |
9 |
agaagcataggaagaacaaacaacaactaccccacctcaagaagaaaatcaactacaaatagaacctttgcagcaacaatctccccaac |
97 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
16865278 |
agaagcattggaagaacaaacaacaactaccccacctcaagaagaaaatcaactacaaatagaacctttgccgcaacaatttcaccaac |
16865190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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