View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_high_1 (Length: 593)
Name: NF17826_high_1
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 275 - 584
Target Start/End: Original strand, 36945922 - 36946236
Alignment:
| Q |
275 |
aggaagacttttcttaagatgaatggataatttgtggcaatgtaactt------cgtgtgataatatttctagcaccttatttctgaacacaggtctgaa |
368 |
Q |
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| T |
36945922 |
aggaagatttttcttaagatcgatagataatttgtagctatgtaactttgcaatcgtgtgataatatttctcgagctttatttctgaacacaggtcagaa |
36946021 |
T |
|
| Q |
369 |
ctatgcaatcctaaggcatctgcaacaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggt |
468 |
Q |
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| T |
36946022 |
ctatgcaatctaaaggcatctgcaacaccacttagttatgttgaaactgaggacatctgtggaaggcctttgggactcaga-tttgacaagaaaactggt |
36946120 |
T |
|
| Q |
469 |
gatttatacattgcagatgcatattttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaaggagtaccgttta |
568 |
Q |
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| T |
36946121 |
gatttatacatagcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaaccgaagcagaaggagtaccattta |
36946220 |
T |
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| Q |
569 |
gatttactgatgatgt |
584 |
Q |
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| T |
36946221 |
gatttactaatgatgt |
36946236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 36945658 - 36945922
Alignment:
| Q |
30 |
atagttatcaaattcataagctatagtcatattctagtagttcaagcttattagtatga-ataaatgtggctaaaagctactatagtacttagtcatagt |
128 |
Q |
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| T |
36945658 |
atagttatcaaattcataagctgtagtcatactctaatagtgcaagcttattagtatgggataaatgtggctaaaagctactatagtactt--------- |
36945748 |
T |
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| Q |
129 |
tctattcctaacttaatgttggaaaactgctacatgcagactttttacctcacaggctaatactagtggtaaagatctcatgctcttgcaccgatctgtg |
228 |
Q |
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| T |
36945749 |
-ctattcctaacttaatgttggaaaactgcttcgtgcagactttttacctcataggctcata-tactagtaaagatctcatgctcttgcagcgatctgcc |
36945846 |
T |
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| Q |
229 |
taaaagttacagaaaatatgtgtgaaattctgctacattgcatctgaggaagacttttcttaagatgaatggataa |
304 |
Q |
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| T |
36945847 |
aaaaaattacagaaaatacatgtgaaagtctgctacattgcatccggggaagatttttcttaagatgaatagataa |
36945922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 393 - 557
Target Start/End: Complemental strand, 17768993 - 17768830
Alignment:
| Q |
393 |
acaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggtgatttatacattgcagatgcatat |
492 |
Q |
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|||||| ||| |||||| | |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||||| |
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| T |
17768993 |
acaccatttagttatgtgaagactgagcacatatgtggaaggcctttgggactcaga-ttcgacaagaaaacaggtgaattgtacattgcagatgcatat |
17768895 |
T |
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| Q |
493 |
tttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaagg |
557 |
Q |
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| T |
17768894 |
cttgggctgttgaaggtggggcccgagggaggtttagcaacatctcttgcaactgaggctgaagg |
17768830 |
T |
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