View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17826_high_16 (Length: 277)
Name: NF17826_high_16
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 29103334 - 29103584
Alignment:
| Q |
9 |
attattcttagtaaatttaatgaaagagaaatttttatcgatccattgatagagaataaaatgtttgattgnnnnnnnttgtgatttcaggatgcatatg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
29103334 |
attatttttagtaaatttaatgaaagagaaatttttatcgatccatcgatagagaataaaatgtttgattgaaaaaaattttgatttcaggatgcatatg |
29103433 |
T |
|
| Q |
109 |
ctctttgccgtatattcaagaagagtacagtgattgctccaaaagttggggagcaatatgttaataatgttgccaggcatgcaaatcatattacaagtga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29103434 |
ctctttgccgtatattcaagaagagtacagtgattgctccaaaaattggggagcaatatgttaataatgttgccaggcatgcaaatcatattacaagtga |
29103533 |
T |
|
| Q |
209 |
tcaatcatcaagcattgagttgtactctgaaggaagagatgaagttatagg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29103534 |
tcaatcatcaagcattgagttgtactctgaaggaagagatgaagttatagg |
29103584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 32789356 - 32789277
Alignment:
| Q |
95 |
tcaggatgcatatgctctttgccgtatattcaagaagagtacagtgattgctccaaaagttggggagcaatatgttaata |
174 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| | ||||||| ||||| |
|
|
| T |
32789356 |
tcaggatgcatatgctctttgccgtgtgatcaagaagagtacagtgattgtgccaaaagttggaggacaatatggtaata |
32789277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University