View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_high_18 (Length: 242)
Name: NF17826_high_18
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7192827 - 7193070
Alignment:
| Q |
1 |
gaaaacatgcgtgtttcttgaatatag-tataaaatattagaacttgtttttgtcttgaccatctgattctcatcaagggattacgatttacgaaccttc |
99 |
Q |
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| T |
7192827 |
gaaaacatgcatgtttcttgaatatatatataaaatattagaacttgtttttgtcttgatcatctgattctcatgaagggattacgatttacgaaccttg |
7192926 |
T |
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| Q |
100 |
atgttctagagtctggttgagattaactaagtctggtcattgattattttagttagtattcgaactttaattttttctaaagattcgtctaagcttatta |
199 |
Q |
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| T |
7192927 |
atgttctagagtccggttgagattaactaagtctggtcattgattactttagttagtatttgaactttaattttttctaaagattcgtctaagcttatta |
7193026 |
T |
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| Q |
200 |
aaccacttgaaccctactacc----tacctactacttagttctt |
239 |
Q |
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| T |
7193027 |
aaccacttgaaccctactacctacgtacctactacttagttctt |
7193070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 7179720 - 7179779
Alignment:
| Q |
170 |
ttttttctaaagattcgtctaagcttattaaaccacttgaaccctactacctacctacta |
229 |
Q |
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| T |
7179720 |
ttttctctgaagatttgtctaagtttattaaaccagttgaaccctactacgtacctacta |
7179779 |
T |
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