View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_high_3 (Length: 460)
Name: NF17826_high_3
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_3 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 5384605 - 5384291
Alignment:
| Q |
19 |
cttgcgatatcatggtaaaaaagtatatacaacaaataacatgtgaaagtgctttgctgtttctttcaataggcttgagatagaatgtttaatttttgta |
118 |
Q |
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| T |
5384605 |
cttgcgatatcatggtaaaaaagtatatacaacaaataacatgtgaaagtgctttgatgtttctttcaataggcttgagatagaatgtttaacttttgta |
5384506 |
T |
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| Q |
119 |
tgacataaattgagaaaattaaaacttcataaattctttagttatgaaatgaaaatataatattaaaatgataaagtgaatctaatattaagaaacaaga |
218 |
Q |
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| T |
5384505 |
tgacataaattgagaaaattaaaacttcataaattctttagttatgaaatgaaaatataatattaaaatgataaagtgaatctaatagtaagaaacaaga |
5384406 |
T |
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| Q |
219 |
tcactcaacaaactcaggtgtcttggagacccctggctacaagttggtaactacaattagagttacctgccaaaaactagatttcaatggaagaattaca |
318 |
Q |
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| T |
5384405 |
tcactcaacaaactcaggtgtcttggagacccctggctacaagttggtaactacaattagagttacctgccaaaaactagatatcaatggaagaattaca |
5384306 |
T |
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| Q |
319 |
acaaaacagattata |
333 |
Q |
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| T |
5384305 |
acaaaacagattata |
5384291 |
T |
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Target: scaffold0294 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 7553 - 7617
Alignment:
| Q |
304 |
aatggaagaattacaacaaaacagattataattgttcatatctaattaggattacataacttcac |
368 |
Q |
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| T |
7553 |
aatggaagaattacaacagaacagattataattgatcatatctatttaggatcacatgacttcac |
7617 |
T |
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