View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_high_5 (Length: 413)
Name: NF17826_high_5
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 189 - 397
Target Start/End: Original strand, 873317 - 873529
Alignment:
| Q |
189 |
ttatttaaatttttagtccttataaata----tcttcagttannnnnnnagtccctatcaaaaaagtcacacttgttggttcttgtaaaaattattccgt |
284 |
Q |
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| T |
873317 |
ttatttaaatttttagtccttataaataaatatcttcagttatttttttaatccctatcaaaaaagtcacacttgttacttcttgtaaaaaattcctcgt |
873416 |
T |
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| Q |
285 |
gagtttaactcaattggttgggagggatatttgtttgcatnnnnnnnngtttgaaaattttaaatacctaaagcacccttaatgcaaaactaaaatctca |
384 |
Q |
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| T |
873417 |
gagcttaactcaattggttgggagggatatttgtttgcataaaaaaaagttttaaaattttaaatacctaaagtacccttaatgcaaaactaaaatctca |
873516 |
T |
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| Q |
385 |
gtttcttctctct |
397 |
Q |
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| T |
873517 |
gtttcttctctct |
873529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 873126 - 873227
Alignment:
| Q |
18 |
gtatgaactattttcatgactaaaatttcttataaagtgatgaattttgttttctcattaccttatttattatgtcatacttaagaaggatagttttgtc |
117 |
Q |
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| T |
873126 |
gtatgaactattttcatgactaaaatttcttatgaagtgatgaattttgttttctcattaccttatttattatgtcatacttaagaaggatagttttgtc |
873225 |
T |
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| Q |
118 |
tc |
119 |
Q |
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|| |
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| T |
873226 |
tc |
873227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 873270 - 873317
Alignment:
| Q |
162 |
tgttcgtttctaagaaattattgtgggttatttaaatttttagtcctt |
209 |
Q |
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| T |
873270 |
tgttcgtttctaagaaattattgtgggttatttaaattttcagtcctt |
873317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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