View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_high_8 (Length: 319)
Name: NF17826_high_8
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_8 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 10647877 - 10648178
Alignment:
| Q |
1 |
aataaaggatgaactaacaatcaaaggctgaatgtcatactatattactaactttatatagtaaaccaggagtacatgtgcaacgtctctattgaagtaa |
100 |
Q |
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| T |
10647877 |
aataaaggatgaactaacaatcaaaggctgaatgtcataccatattactaactttatatagtaaactaggagtacatgtgcaacgtctctattgaagtaa |
10647976 |
T |
|
| Q |
101 |
cacctcactagttaacttcggtgtttcacactttcactagtaaaatattgttgggtgactagtcaaggttgctcaacttttgaaattgacatcgagggat |
200 |
Q |
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| T |
10647977 |
cacctcactagttaacttcggtgtttcacacattcactagtaaaatattgttgggtgactagtcaaggttgctcaactttcaaaattgacatcgagggat |
10648076 |
T |
|
| Q |
201 |
caacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccaaaaggcctcgtaattggcctccactgtcccaattcatatatatt |
300 |
Q |
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| T |
10648077 |
caacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccacaaggcctcgtaattggcctccactgtcccaattcatatatatt |
10648176 |
T |
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| Q |
301 |
at |
302 |
Q |
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|| |
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| T |
10648177 |
at |
10648178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 48 - 295
Target Start/End: Complemental strand, 8588 - 8336
Alignment:
| Q |
48 |
ctaactttatatagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaata |
147 |
Q |
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| T |
8588 |
ctaactctagatagtagactaggagtacatgttcagcgtctctattgaagcaacacctcactagttgacttcgatgctttacattctcactagtaaaata |
8489 |
T |
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| Q |
148 |
ttgttgggtgactagtcaaggttgctcaacttttgaaatt------gacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagat |
241 |
Q |
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| T |
8488 |
ttgtcaggtgattagtcagggctgtccagctttataagtttgtcccgacatcgtgggatcaacacgagtcacataggagttccacaccagacatataga- |
8390 |
T |
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| Q |
242 |
tttgtgaatcacccaaaaggcctcgtaattggcctccactgtcccaattcatat |
295 |
Q |
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| T |
8389 |
ttcgtaaatcaccctcaaggcccagtaattggcctccaccatcccaattcatat |
8336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 12178996 - 12178890
Alignment:
| Q |
59 |
tagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaatattgttgggtga |
158 |
Q |
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| T |
12178996 |
tagtagactaggagtacatgttcagcgtctctattgaagcaacacctcactggttaacttcgatgctttacactctcactagtaaaatattgtcaggtga |
12178897 |
T |
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| Q |
159 |
ctagtca |
165 |
Q |
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| T |
12178896 |
ctagtca |
12178890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 8680785 - 8680692
Alignment:
| Q |
58 |
atagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaatattgt |
151 |
Q |
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| T |
8680785 |
atagtataccaggagtacatgtccaacgtctttgttgaaggaacaccatactagtttacttcggtgcttgacactctcactagtaaaatattgt |
8680692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 10301128 - 10301226
Alignment:
| Q |
48 |
ctaactttatatagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaat |
146 |
Q |
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| T |
10301128 |
ctaactctagatagtagactaggaatacatgtttagcatctcttttgaagcaacatctcacgggttgacttcggtgcttcacactttcattagtaaaat |
10301226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 10301272 - 10301376
Alignment:
| Q |
188 |
gacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccaaaaggcctcgtaattggcctccactgtccca |
287 |
Q |
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||||||| ||||||| ||| |||||| ||||||| || | ||| ||||||||||| || |||||| || |||| |||||||||||||||| ||||| |
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| T |
10301272 |
gacatcgtgggatcagcacgagtcacctaggagtttcagaccagacatatagattt-gtagatcacctaa--ggccccgtaattggcctccaccatccca |
10301368 |
T |
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| Q |
288 |
attcatat |
295 |
Q |
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|||||||| |
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| T |
10301369 |
attcatat |
10301376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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