View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_high_9 (Length: 315)
Name: NF17826_high_9
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 18161073 - 18161361
Alignment:
| Q |
12 |
tcatcaacgccaaattttgaggcatacattttggcaaagttggtcagagtaaaagcccaaccatgcaaaccagcagaaaaagcaactgttcctttctctg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18161073 |
tcatcaacgccaaattttgaggcatacattttggcaaagttggtcagagtaaaagcccaaccatgcaaaccagcagaaaaagcaactgttcctttctctg |
18161172 |
T |
|
| Q |
112 |
gatacacctgaacatcaccaagaagtggatcttcatatgtagccatgatcacattagcattctcaatcacccttgaaaaggtctggtacgcctcctctcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18161173 |
gatacacctgaacatcaccaagaagtggatcttcatatgtagccatgatcacattagcattctcaatcacccttgaaaaggtctggtacgcctcctctcc |
18161272 |
T |
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| Q |
212 |
atcaacctggagctcaaggaagcacctgtccatcttattaactgtaagaacaggcctgatcctttctccaagagcttgtcgcagcacag |
300 |
Q |
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| T |
18161273 |
atcaacctggagctcaaggaagcacctgtccatcttattaactgtaagaacaggcctgatcctttctccaagagcttgtcgaagcacag |
18161361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 28687060 - 28686775
Alignment:
| Q |
15 |
tcaacgccaaattttgaggcatacattttggcaaagttggtcagagtaaaagcccaaccatgcaaaccagcagaaaaagcaactgttcctttctctggat |
114 |
Q |
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||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
28687060 |
tcaacaccaaatttagaggcatacatctttgcaaagttggtcagagtaaaagcccaaccgtgcaaaccagcagagaaagcaactgttcctttctcgggat |
28686961 |
T |
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| Q |
115 |
acacctgaacatcaccaagaagtggatcttcatatgtagccatgatcacattagcattctcaatcacccttgaaaaggtctggtacgcctcctctccatc |
214 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || || || |||||||| || |||||||||||||| |
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| T |
28686960 |
acacttgaacatcaccaagcaatggatcttcatatgtagccatgatcacattagcattctcaataactctcgagaaggtctgataagcctcctctccatc |
28686861 |
T |
|
| Q |
215 |
aacctggagctcaaggaagcacctgtccatcttattaactgtaagaacaggcctgatcctttctccaagagcttgtcgcagcacag |
300 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
28686860 |
aacctggagctcaaggaagcatctgtccatcttgttaactgtcagaactggcctgatcctttctccaagagcctgtcgcagcacag |
28686775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 28793337 - 28793052
Alignment:
| Q |
15 |
tcaacgccaaattttgaggcatacattttggcaaagttggtcagagtaaaagcccaaccatgcaaaccagcagaaaaagcaactgttcctttctctggat |
114 |
Q |
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||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
28793337 |
tcaacaccaaatttagaggcatacatctttgcaaagttggtcagagtaaaagcccaaccgtgcaaaccagcagagaaagcaactgttcctttctcgggat |
28793238 |
T |
|
| Q |
115 |
acacctgaacatcaccaagaagtggatcttcatatgtagccatgatcacattagcattctcaatcacccttgaaaaggtctggtacgcctcctctccatc |
214 |
Q |
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|||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| |
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| T |
28793237 |
acacttgaacatcaccgagcaatggatcttcatatgtagccatgatcacattagcattctcaataactcttgagaaggtctgataagcctcctctccatc |
28793138 |
T |
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| Q |
215 |
aacctggagctcaaggaagcacctgtccatcttattaactgtaagaacaggcctgatcctttctccaagagcttgtcgcagcacag |
300 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
28793137 |
aacctggagctcaaggaagcatctgtccatcttgttaactgtcagaaccggcctgatcctttctccaagagcctgtcgcagcacag |
28793052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 28798442 - 28798154
Alignment:
| Q |
12 |
tcatcaacgccaaattttgaggcatacattttggcaaagttggtcagagtaaaagcccaaccatgcaaaccagcagaaaaagcaactgttcctttctctg |
111 |
Q |
| |
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|||||||| ||||| ||||| |||||||| || ||||||||||| |||||||||| ||| ||||| |||||||||||||||| ||||||||| || || | |
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| T |
28798442 |
tcatcaactccaaactttgaagcatacatcttagcaaagttggtgagagtaaaagaccatccatgtaaaccagcagaaaaagaaactgttcccttttcag |
28798343 |
T |
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| Q |
112 |
gatacacctgaacatcaccaagaagtggatcttcatatgtagccatgatcacattagcattctcaatcacccttgaaaaggtctggtacgcctcctctcc |
211 |
Q |
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| || ||||||||||||||||| | | |||||||||||| ||||||| ||||| || ||||||| || ||| || ||| ||| ||||| ||| | |
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| T |
28798342 |
ggtaaacctgaacatcaccaagtaaagcatcttcatatgttgccatgacaacattcacactctcaatgactctttgaatcgtcgagtatgcctcttctgc |
28798243 |
T |
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| Q |
212 |
atcaacctggagctcaaggaagcacctgtccatcttattaactgtaagaacaggcctgatcctttctccaagagcttgtcgcagcacag |
300 |
Q |
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||||| || |||||||| || || || ||||| || ||||| || | |||||| | |||||||||||||| ||||||| |||||||| |
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| T |
28798242 |
atcaagatgaagctcaagaaaacatctatccattttgttaacagttaaaacaggtttaatcctttctccaagtgcttgtctcagcacag |
28798154 |
T |
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