View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17826_low_1 (Length: 665)
Name: NF17826_low_1
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 391 - 655
Target Start/End: Complemental strand, 39816978 - 39816714
Alignment:
| Q |
391 |
cgctatattagggttttgtcgtgtatctctttaataagatgagcttttgattctgattatagtgataacttgtggaaacaggatgtgggcggtctggtat |
490 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39816978 |
cgctatattagggttttgtcatgtatctctttaataagatgagcttttgattctgattatagtgataacttgtggaaacaggatgtgggcggtctggtat |
39816879 |
T |
|
| Q |
491 |
ttttcgctaattatagcattgagtttcatctccaattactgatttgaagtaataaaactattgttttgatacgttaattgatgaatagttgtttgcttta |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39816878 |
ttttcgctaattatagcattgagtttcatctccaattactgatttgaagtaataaaactattgttttgatttgttaattgatgaatagttgtttgcttta |
39816779 |
T |
|
| Q |
591 |
tcgtttcctgtaaattagttgaacgctgatactatgtcgttgatctgattgtagtttactctgtg |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39816778 |
tcgtttcctgtaaattagttgaacgctgatactatgtcgttgatctgattgtagtttactctgtg |
39816714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 39817351 - 39817120
Alignment:
| Q |
18 |
atgagtgtgatcgatacttgaaactttgaaagtgccaattctggttttaattgtgtttttattgatcaatgttagtgattgattagttattaggttagtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39817351 |
atgagtgtgatcgatacttgaaactttgaaagtgccaattctggttttaattgtgttttaattgatcaatgttggtgattgattagttattaggttagtg |
39817252 |
T |
|
| Q |
118 |
tttttgtccttcatcaaggtttgaatccgggtactccaattcctttaatccttagctcaaatttgttgaactaccaatccccaatggtgtttttgattag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39817251 |
tttttgtccttcatcaaggtttgaatccgggtactccaattcctttaatccttagctcaaatttgtcgaactaccaatccccaatggtgtttttgattag |
39817152 |
T |
|
| Q |
218 |
tggtgaatggaagttaagttaagttgtgtgga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39817151 |
tggtgaatggaagttaagttaagttgtgtgga |
39817120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 393 - 614
Target Start/End: Complemental strand, 39816650 - 39816428
Alignment:
| Q |
393 |
ctatattagggttttgtcgtgtatctctttaataagatgagcttttgattctgattatagtgataacttgtggaaacaggatgtgggcggtctggtattt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||| |||||||||||||||| || || |||||| |
|
|
| T |
39816650 |
ctatattagggttttgtcgtgtatctctttaatgagacgaggttttgattctggttatagtgataaattgtggaaacaggatgctagcagttcagtattt |
39816551 |
T |
|
| Q |
493 |
ttcgctaattatagcattgagtttcatctccaattactgatttgaagtaataaaactattgttttgatacgttaattgatgaatagttgttt-gctttat |
591 |
Q |
| |
|
|||| | |||||||||||| ||| ||||| ||||| ||| ||||||||||||||||| ||||||||| | ||||| ||||||| ||||||| |||||| |
|
|
| T |
39816550 |
ttcgtcagttatagcattgaattttatctctaattattgacttgaagtaataaaactactgttttgatgcattaatggatgaattgttgtttacctttat |
39816451 |
T |
|
| Q |
592 |
cgtttcctgtaaattagttgaac |
614 |
Q |
| |
|
||||||| |||||| ||||||| |
|
|
| T |
39816450 |
cgtttccgttaaatttgttgaac |
39816428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 44361279 - 44361335
Alignment:
| Q |
135 |
ggtttgaatccgggtactccaattcctttaatccttagctcaaatttgttgaactac |
191 |
Q |
| |
|
|||||||| | |||| |||||| |||||||| |||||||||||| | |||||||||| |
|
|
| T |
44361279 |
ggtttgaacctgggtcctccaactcctttaacccttagctcaaactagttgaactac |
44361335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University