View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_low_10 (Length: 377)
Name: NF17826_low_10
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 33082364 - 33082011
Alignment:
| Q |
17 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082364 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
33082265 |
T |
|
| Q |
117 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaat |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
33082264 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaat |
33082165 |
T |
|
| Q |
217 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttctta |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33082164 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttctta |
33082065 |
T |
|
| Q |
317 |
atggtatttctggctaacttggctgtgaaatttattgatattgtgcctttgctt |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33082064 |
atggtatttctggctaacttggctgtgaaatttattgattttgtgcctttgctt |
33082011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 33092224 - 33091871
Alignment:
| Q |
17 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092224 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
33092125 |
T |
|
| Q |
117 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
33092124 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaat |
33092025 |
T |
|
| Q |
217 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttctta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33092024 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttctta |
33091925 |
T |
|
| Q |
317 |
atggtatttctggctaacttggctgtgaaatttattgatattgtgcctttgctt |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
33091924 |
atggtatttctggctaacttggctgtgaaatttattgattttgtgcctttgctt |
33091871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 33099720 - 33099367
Alignment:
| Q |
17 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099720 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
33099621 |
T |
|
| Q |
117 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
33099620 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaat |
33099521 |
T |
|
| Q |
217 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttctta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
33099520 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttctta |
33099421 |
T |
|
| Q |
317 |
atggtatttctggctaacttggctgtgaaatttattgatattgtgcctttgctt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33099420 |
atggtatttctggctaacttggctgtgaaatttattgattttgtgcctttgctt |
33099367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 33072628 - 33072318
Alignment:
| Q |
17 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatga-------tgatcctaaactgataaagagaagtat |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||||| |||||| || ||||| |
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|
| T |
33072628 |
agctattgctaagaaggaagcatggaaagtagtaacaaagagagcttcgggaattaaggttcatgaatcatgatgatcctaaattgataaggaaaagta- |
33072530 |
T |
|
| Q |
110 |
acagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtc |
209 |
Q |
| |
|
|||||| ||||||| ||||| || ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
33072529 |
-cagaaaaggaagaagaggcaacataaaaatgcagagaaatgggaagagagggttcaatcaagggatcagttgaaggcagagaaacaacaaaaaaaggtt |
33072431 |
T |
|
| Q |
210 |
agcaaatatagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaagga |
309 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
33072430 |
tgcaaatatagctgagaggattaatgataagaaactgaggaagattgcaaagagagagaagaagctattacggcctggatttgaaggtcgtaaggaaggt |
33072331 |
T |
|
| Q |
310 |
tttcttaatggta |
322 |
Q |
| |
|
|||| |||||||| |
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|
| T |
33072330 |
tttcgtaatggta |
33072318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 3931513 - 3931197
Alignment:
| Q |
17 |
agctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||| || |
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|
| T |
3931513 |
agctattgctaaaaaggaagcatggaaagcagcaatggacagagcttcaggaattaaggtccatgatgatcccaaactgataaagaaaagcatacataag |
3931414 |
T |
|
| Q |
117 |
cggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaat |
216 |
Q |
| |
|
|||||| ||| | ||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||| | |||||||||| ||| |
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|
| T |
3931413 |
gtgaagaagcagcaagaaaaaaatgcagagaaatgggaagagagagttcaatcaagggatcagttgaaggcagagaagcaaa-agaaaaggtcagataat |
3931315 |
T |
|
| Q |
217 |
atagctgagaagattaatgatgagaaactgaggaagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttctta |
316 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||||||||||||||||| || |||||| ||| || |||||| |||| |||||||| ||| ||| |
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|
| T |
3931314 |
atagctgagaggattaatgataagaaaatgaggaagattgcaaagagagagaaaaagctattacggccgggctttgaaggtcgcaaggaaggttttatta |
3931215 |
T |
|
| Q |
317 |
atggtatttctggctaac |
334 |
Q |
| |
|
|| | | ||||||||||| |
|
|
| T |
3931214 |
atagcagttctggctaac |
3931197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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