View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_low_24 (Length: 234)
Name: NF17826_low_24
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 7192811 - 7192627
Alignment:
| Q |
37 |
aagtttcaattggatccaattgttgacgttcgagttggacactaatgattctaattcatgtttataattgtacttatatatgttgtttttgttgacaata |
136 |
Q |
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| T |
7192811 |
aagtttcaattggatccaattgttgacgttcgagttggacactaatgattctaattcatgtttataattgtacttatatatgttgtttttgttgacaata |
7192712 |
T |
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| Q |
137 |
aacgcatacaattaatgaaaagatgcatgttttaatttgtgtaaataaaatatgtagaggaagataatatcattgacaaatcaag |
221 |
Q |
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| T |
7192711 |
aacgcatacaattaatgaaaagatgcatgttttaatttgtgtaaataaaatatgtagaggaagataatatcattgacaaatcaag |
7192627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 7179516 - 7179458
Alignment:
| Q |
163 |
atgttttaatttgtgtaaataaaatatgtagaggaagataatatcattgacaaatcaag |
221 |
Q |
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| T |
7179516 |
atgttttaatttgtgtaaatgaaatttgcagaggaagataatattattgacaaatcaag |
7179458 |
T |
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