View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_low_28 (Length: 220)
Name: NF17826_low_28
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 4865158 - 4865344
Alignment:
| Q |
18 |
ccacattaaaataattatggctgcattttaaagtagtcacattnnnnnnnn----cagtggcgactacatcaccattttcatattttaaactctcactct |
113 |
Q |
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| T |
4865158 |
ccacattaaaataattatggctgcattttaaagtagtcacattaaaaaaaaaaaacagtggcgactacatcaccattatcatattttaaactctcactct |
4865257 |
T |
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| Q |
114 |
cattaagtgaaagagctggtcatgtaaatgaaagaggggtaaaatttcccatacatcattggagtatgtaatttttattaagaaagc |
200 |
Q |
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||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4865258 |
cattaagtgaaagagctggtcctgtaaatgaaatagaggtaaaatttcccatacatcattggagtatgtaatttttattaagaaagc |
4865344 |
T |
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