View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_low_3 (Length: 516)
Name: NF17826_low_3
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 44897661 - 44897173
Alignment:
| Q |
9 |
aaataaataagttaattcaaatgattagaaaattgatttgtattaagcagtacctatgcatttggcaaaattgtcacgatgaagtaacccgtttttgtca |
108 |
Q |
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| T |
44897661 |
aaataaataagttaattgaaatgattagaaaattgatatgtattaagcagtacctatgcattcggcaaagttgtcacgatgaagtaacccgtt---gtca |
44897565 |
T |
|
| Q |
109 |
gcaagcttatcaaactttttctcaaccgtttcccatccagcatcaccatcattcttagtgataaacctgaattcccggagagcatgagaagctacagaat |
208 |
Q |
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| T |
44897564 |
gcaagcttatcaaactttttctcaaccgtttcccatccagcatcaccatcattcttagtgataaacctgaattcccggagagcatgagaagctacagaat |
44897465 |
T |
|
| Q |
209 |
cagtcctagcatgcttcaccttttcaactccaacttgttttgaaaaagaagttaaacgagtcaactcctgagaaactttcctcagatgatttgaagcagt |
308 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44897464 |
cagtcctagcatgcttcactttttcaactccaacttgttttgaaaaagaagttaaacgagtcaactcctgagaaactttcctcagatgatttgaagcagt |
44897365 |
T |
|
| Q |
309 |
tctcacaaacgaatcaccaaaagaccttttcttctccattcctttgccaagcaaatcaagtttctcatcttcttcatcattattgtttccggtaacaggt |
408 |
Q |
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| T |
44897364 |
tctcacaaacgaatcaccaaaagaccttttcttctccattcctttgccaagcaaatcaagtttctcatcttcttcataattattgtttccggtaacaggt |
44897265 |
T |
|
| Q |
409 |
gtaaagtgtaaagcaaccttcttaccgtgaatatctagtgttacatcaacaagatctccttctttatttatgtcagagttagactcagttct |
500 |
Q |
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| T |
44897264 |
gtaaagtgtaaagcaaccttcttaccttgaatatctagtgttacatcaacaagatctccttctttatttatgtcagagttagactcagttct |
44897173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 237 - 380
Target Start/End: Complemental strand, 44913007 - 44912864
Alignment:
| Q |
237 |
tccaacttgttttgaaaaagaagttaaacgagtcaactcctgagaaactttcctcagatgatttgaagcagttctcacaaacgaatcaccaaaagacctt |
336 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||||| | ||| | || | ||||||||||| ||||| ||| |||||||||| ||| |
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| T |
44913007 |
tccaacttgtttcgaaaaagaagttaatttcttcaactcctgagaaacatgtttcatacgaatcgaagcagttctaacaaaagaagcaccaaaagatctt |
44912908 |
T |
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| Q |
337 |
ttcttctccattcctttgccaagcaaatcaagtttctcatcttc |
380 |
Q |
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| T |
44912907 |
ttcttctccattcctttaccaagcaaaacaagtttctcatcttc |
44912864 |
T |
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