View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_low_31 (Length: 206)
Name: NF17826_low_31
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 48526451 - 48526290
Alignment:
| Q |
36 |
ttggaatcatgtaggatgaattggtgtgggcagcaacttggctatacatggcaacaaagaaatcgttgtacatgaaatacatacaagaagaatcaattag |
135 |
Q |
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| T |
48526451 |
ttggaatcatgtaggatgaattggtgtgggcagcaacttggctatacatggcaacaaagaaatcgttgtacatgaaatatatacaagaagaatcaattag |
48526352 |
T |
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| Q |
136 |
tgctaatgtagcagaattcagttgggatcttaaatatgctggagttcaagttcttctcactc |
197 |
Q |
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| T |
48526351 |
tgctaatgtagcagaattcagttgggatcttaaatacgctggagttcaagttcttctcactc |
48526290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 7221842 - 7221692
Alignment:
| Q |
47 |
taggatgaattggtgtgggcagcaacttggctatacatggcaacaaagaaatcgttgtacatgaaatacatacaagaagaatcaattagtgctaatgtag |
146 |
Q |
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| T |
7221842 |
taggatgagttaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtag |
7221743 |
T |
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| Q |
147 |
cagaattcagttgggatcttaaatatgctggagttcaagttcttctcactc |
197 |
Q |
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| T |
7221742 |
cagaattcagttgggaccttaaatatgctggagttcaagttcttctcactc |
7221692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 50306509 - 50306651
Alignment:
| Q |
60 |
tgtgggcagcaacttggctatac----atggcaacaaagaaatcgttgtacatgaaatacatacaagaagaatcaattagtgctaatgtagcagaattca |
155 |
Q |
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| T |
50306509 |
tgtgggcagcaacatggctatacatacatggcaacaggaaaatctatgtacatgaagtatatacaagaagaagcaattagtgctagtgtaacggtattta |
50306608 |
T |
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| Q |
156 |
gttgggatcttaaatatgctggagttcaagttcttctcactcg |
198 |
Q |
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| T |
50306609 |
gctgggaccttaaatatgtcggagttcaagttcttctcactcg |
50306651 |
T |
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