View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17826_low_6 (Length: 419)
Name: NF17826_low_6
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17826_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 11579174 - 11579577
Alignment:
| Q |
1 |
aaaagcaaacatttttaaagcaatatcaccttttgaatgttcaagagggtaacgtttgatactggattcagattcagatataggaatagaatcacctgaa |
100 |
Q |
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| T |
11579174 |
aaaagcaaacatttttaaagcaatatcaccttttgaatgttcaagagggtaacgtttgatactggattcagattcagatataggaatagaatcacctgaa |
11579273 |
T |
|
| Q |
101 |
attctcacctttccaagaaaattcttcttactatttggttttttgtcattgtgattgtacacaccaacttcaactattttgtgagcaagatctcttgaag |
200 |
Q |
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| T |
11579274 |
attctcacctttccaagaaaattcttcttactatttggttttttgtcattgtgattgtacacaccaacttcaactgttttgtgagcaagatctcttgaag |
11579373 |
T |
|
| Q |
201 |
tgtttatgttgaacataaacttttcattaaaataaggattttggtcttggtatttggtttgtgtcttcacttgttgttcatcaaagtttatttgaacata |
300 |
Q |
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| T |
11579374 |
tgtttatgttgaacataaacttttcattaaaataaggattttggtcttggtatttggtttgtgtcttcacttgttgttcatcaaagtttatttgaacata |
11579473 |
T |
|
| Q |
301 |
tgggttggctgaaccttttccatcttttggcataaggttactagcatcatgaacttccaccaccaatctgttcatcttgattgtataataataattgtag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11579474 |
tgggttggctgaaccttttccatcttttggcataaggttactagcatcatgaacttccaccaccaatctgttcatcttgattgtatgataataattgtag |
11579573 |
T |
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| Q |
401 |
tttt |
404 |
Q |
| |
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|||| |
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| T |
11579574 |
tttt |
11579577 |
T |
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