View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17826_low_8 (Length: 386)

Name: NF17826_low_8
Description: NF17826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17826_low_8
NF17826_low_8
[»] chr2 (9 HSPs)
chr2 (172-366)||(1402905-1403099)
chr2 (172-364)||(1399212-1399403)
chr2 (1-111)||(1403161-1403271)
chr2 (1-103)||(1399464-1399566)
chr2 (1-84)||(410180-410263)
chr2 (216-270)||(974971-975025)
chr2 (34-80)||(821078-821124)
chr2 (216-270)||(965702-965756)
chr2 (216-257)||(409824-409865)
[»] chr3 (1 HSPs)
chr3 (8-80)||(45810550-45810622)
[»] chr6 (2 HSPs)
chr6 (206-257)||(10117267-10117318)
chr6 (1-67)||(10116804-10116870)
[»] chr7 (4 HSPs)
chr7 (211-257)||(1446151-1446197)
chr7 (209-257)||(1459552-1459600)
chr7 (22-74)||(12105209-12105261)
chr7 (39-73)||(1446105-1446139)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 172 - 366
Target Start/End: Complemental strand, 1403099 - 1402905
Alignment:
Q  172 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403099 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 1403000  T
Q  272 ccatgataggttatatctgctttgttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtc 366  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1402999 ccatgatcggttatatctgctttgttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtc 1402905  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 172 - 364
Target Start/End: Complemental strand, 1399403 - 1399212
Alignment:
Q  172 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1399403 tatcacattatt-tttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 1399305  T
Q  272 ccatgataggttatatctgctttgttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaaggg 364  Q
     |||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||||||    
T  1399304 tcatggtcggttatatctgctttgttcaacctttttaagcttgagccgcttaattgttggttacgatatagagaagagaaacgagcggaaggg 1399212  T

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Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1403271 - 1403161
Alignment:
Q  1 atggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattaggtggacaataaccctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403271 atggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattaggtggacaataaccctac 1403172  T
Q  101 atttgaaagaa 111  Q
    |||||||||||    
T  1403171 atttgaaagaa 1403161  T

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Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1399566 - 1399464
Alignment:
Q  1 atggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattaggtggacaataaccctac 100  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1399566 atggtggagcacttgtacaattatatcacagctatagttgagcaccagatgagtcaaattatggaatgtagaaaagtcattaggtggacaataaccctac 1399467  T
Q  101 att 103  Q
    |||    
T  1399466 att 1399464  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 410263 - 410180
Alignment:
Q  1 atggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattagg 84  Q
    ||||| |||||||||||||| |||||| | ||  ||||||| ||||| |||  ||||||||||||||||||| |||||||||||    
T  410263 atggtggagcacttgtacaactatatccccgtcgtagttgatcaccaaatggatcaaattatggaatgtagggaagtcattagg 410180  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 974971 - 975025
Alignment:
Q  216 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca 270  Q
    |||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  974971 atagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagca 975025  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 821124 - 821078
Alignment:
Q  34 atagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 80  Q
    ||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  821124 atagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtcat 821078  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 965702 - 965756
Alignment:
Q  216 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca 270  Q
    ||||||||||| ||| ||| |||| |||||||||||||||||||  |||||||||    
T  965702 atagttgtatgtgtaaaaattccaaatttgaaagtgatttcaccggaaaatagca 965756  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 409865 - 409824
Alignment:
Q  216 atagttgtatgcgtagaaactccacatttgaaagtgatttca 257  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  409865 atagttgtatacgtagaaactccaaatttgaaagcgatttca 409824  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 45810550 - 45810622
Alignment:
Q  8 agcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 80  Q
    ||||||||||||| |||||| || | |||||||| ||||| |||||||||||||| |||||||||||||||||    
T  45810550 agcacttgtacaactatatcccaatcatagttgaccaccaaatgagtcaaattattgaatgtaggaaagtcat 45810622  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 10117267 - 10117318
Alignment:
Q  206 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 257  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||| |||||    
T  10117267 caaaccttgaatagttgtatgcctagaaactccaaatttgaaagtgctttca 10117318  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10116804 - 10116870
Alignment:
Q  1 atggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaat 67  Q
    ||||| |||||||||||||| |||||| || | ||||  |||||||| |||||||||||||||||||    
T  10116804 atggtggagcacttgtacaactatatcccaatcatagaggagcaccaaatgagtcaaattatggaat 10116870  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 1446151 - 1446197
Alignment:
Q  211 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 257  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1446151 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 1446197  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 1459552 - 1459600
Alignment:
Q  209 accttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 257  Q
    |||||| |||||| |||| |||||||||||||||||||||||| |||||    
T  1459552 accttggatagttttatgtgtagaaactccacatttgaaagtgctttca 1459600  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 12105261 - 12105209
Alignment:
Q  22 tatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaa 74  Q
    |||||| || ||||||  |||||||| ||||||||||||||||||||||||||    
T  12105261 tatatcccaattatagcagagcaccaaatgagtcaaattatggaatgtaggaa 12105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 1446105 - 1446139
Alignment:
Q  39 tgagcaccagatgagtcaaattatggaatgtagga 73  Q
    ||||||||| |||||||||||||||||||||||||    
T  1446105 tgagcaccaaatgagtcaaattatggaatgtagga 1446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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