View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17827_high_1_N (Length: 456)
Name: NF17827_high_1_N
Description: NF17827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17827_high_1_N |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 25 - 452
Target Start/End: Original strand, 11780310 - 11780738
Alignment:
| Q |
25 |
tcatcatgcaaccggg-aaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaa |
123 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
|
|
| T |
11780310 |
tcatcatgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaa |
11780409 |
T |
|
| Q |
124 |
gatgttgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11780410 |
gatgttgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactgctgaagtagaattaacaaccgaccccatgtgtgagctagcaa |
11780509 |
T |
|
| Q |
224 |
taatagggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
11780510 |
taatagggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggaactctctgagaagtggtgactgtcgaagtaatcggaac |
11780609 |
T |
|
| Q |
324 |
cggaacccaagtccaagtacttccattggccgaagtggaagcccccc-atctgtggtgctgctcagttattgtagggggtgctttctcagccacaacgat |
422 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| || |||| || || ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11780610 |
cggaacctaagtccaagtacttccattggccgaagtggaagcccccccatttgtg-tgttgtcgagttattgtagggagtgctttctcagccacaacgat |
11780708 |
T |
|
| Q |
423 |
ttgtttcccacgatcatctttatcctttgg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11780709 |
ttgtttcccacgatcatctttatcctttgg |
11780738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 39 - 377
Target Start/End: Original strand, 17158744 - 17159082
Alignment:
| Q |
39 |
ggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaat |
138 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
17158744 |
ggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaat |
17158843 |
T |
|
| Q |
139 |
gatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggtccggaa |
238 |
Q |
| |
|
|| ||| | ||||||||||| |||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
17158844 |
gacgtcttgggcatagggactgtcaactgagaagtaacaactgctgaagtagaagtaacaaccggccccatgtgtgagctagcaatagtacggaccggaa |
17158943 |
T |
|
| Q |
239 |
tagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtcca |
338 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
17158944 |
tagcctgagaagacagagccagtgttgaaggggtagtagtaaccagaactctctgaaaagtggtgactgttgaagtaatcggaaccggaacccaagtcga |
17159043 |
T |
|
| Q |
339 |
agtacttccattggccgaagtggaagccccccatctgtg |
377 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| |||| |
|
|
| T |
17159044 |
ggtactgccattggccaaagttgaagccccccatatgtg |
17159082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 38 - 453
Target Start/End: Complemental strand, 12101867 - 12101453
Alignment:
| Q |
38 |
gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
137 |
Q |
| |
|
|||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12101867 |
gggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaagatgttgacgacaa |
12101768 |
T |
|
| Q |
138 |
tgatgtcctaggcatagggac-----cgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggt |
232 |
Q |
| |
|
||| ||| ||||||||| || | |||| || |||||| |||||| ||| ||||| | |||||||| ||||||| |||||| || ||||| |
|
|
| T |
12101767 |
tgacgtcataggcatagtgattccttcatcatctgtgaagtatcaactgttgaagtagagtgaacaaccgaccccatgggtgagcaag------tagggg |
12101674 |
T |
|
| Q |
233 |
ccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaaccca |
332 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||||||||| ||| ||| || ||||||||| |||| ||| | ||||||||||| ||| ||||||||| |
|
|
| T |
12101673 |
ccggaatagccagagaaggctgagccagtgttgaaggggcagaagtgaccagaactctctgagtagtggtgactatcgaagtaatcagaatcggaaccca |
12101574 |
T |
|
| Q |
333 |
agtccaagtacttccattggccgaagtggaagcc-ccccatctgtggtgctgctcagttattgtagggggtgctttctcagccacaacgatttgtttccc |
431 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||| |||||||| | |||||| |||| || |||||||||||||||||||||||| |||||||| || |
|
|
| T |
12101573 |
agtccaggtactgccattggctgaagtggaagcctccccatctat-gtgctggcgagttgttttagggggtgctttctcagccacaataatttgttttcc |
12101475 |
T |
|
| Q |
432 |
acgatcatctttatcctttggc |
453 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12101474 |
acgatcatctttatcctttggc |
12101453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 14977410 - 14977301
Alignment:
| Q |
261 |
tgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtg |
360 |
Q |
| |
|
||||| || ||||| |||||| ||| |||||||||| || | |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
14977410 |
tgttgcagaggcagaagtaactggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtg |
14977311 |
T |
|
| Q |
361 |
gaagcccccc |
370 |
Q |
| |
|
||||| |||| |
|
|
| T |
14977310 |
gaagctcccc |
14977301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 14977595 - 14977470
Alignment:
| Q |
49 |
tcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaatgatgtcctag |
148 |
Q |
| |
|
|||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||||| ||||| || ||||| | |
|
|
| T |
14977595 |
tcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgttgatgacaaagacgtcctgg |
14977496 |
T |
|
| Q |
149 |
gcatagggaccgtcatatgagaagta |
174 |
Q |
| |
|
||| ||||||| |||| ||||||||| |
|
|
| T |
14977495 |
gcacagggaccatcatctgagaagta |
14977470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 11776668 - 11776713
Alignment:
| Q |
320 |
gaaccggaacccaagtccaagtacttccattggccgaagtggaagc |
365 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
11776668 |
gaaccggaacccacgtccaagcgcttccattggccgaaatggaagc |
11776713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 140467 - 140525
Alignment:
| Q |
310 |
gaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtggaagcccc |
368 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
140467 |
gaagtaataggaaccgggaaccaagtccaagtacctccattggccgaagttgaagcccc |
140525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 19069624 - 19069709
Alignment:
| Q |
52 |
aacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
137 |
Q |
| |
|
|||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
|
|
| T |
19069624 |
aacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University