View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17827_high_2 (Length: 437)
Name: NF17827_high_2
Description: NF17827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17827_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 28988347 - 28987955
Alignment:
| Q |
1 |
gccacaaaataacagggctcaaaatcagaacccggaagcatcattaacataatcaatgtacacaacctcagagaaaagaaagaagaaaaggtatttttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988347 |
gccacaaaataacagggctcaaaatcagaacccagaagcatcattaacataatc---gtacacaacctcagagaaaagaaagaagaaaaggtatttttcc |
28988251 |
T |
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| Q |
101 |
cccaccacactacaattatttaaagctccaaaattctaacttagactttactagctacgaagcagacaccgacacgacactgacacggatacgtcgacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988250 |
cccaccacactacaattatttaaagctccaaaattctaacttatactttactagctacgaagcagacaccgacacgacactgacacggatacgtcgacac |
28988151 |
T |
|
| Q |
201 |
aggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggatacaggaaacacctaatctaagaggtgtccgtgcttcagaacttact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988150 |
aggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggacacaggaaacacctaatctaagaggtgtccgtgcttcagaacttact |
28988051 |
T |
|
| Q |
301 |
agtaacaactcactacctatgatac---tacactgacacagctactaatttcagaaaatggaagtaattgaatgtaaccacacgctgacacaggtt |
393 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988050 |
agtaacaactcactacctatgaaacactgacactgacacagctactaattttagaaaatggaagtaattgaatgtaaccacacgctgacacaggtt |
28987955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 2468521 - 2468485
Alignment:
| Q |
343 |
taatttcagaaaatggaagtaattgaatgtaaccaca |
379 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
2468521 |
taatttaagaaaatggaagtaattgaatgtaaccaca |
2468485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 27131721 - 27131685
Alignment:
| Q |
343 |
taatttcagaaaatggaagtaattgaatgtaaccaca |
379 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
27131721 |
taatttaagaaaatggaagtaattgaatgtaaccaca |
27131685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 9018918 - 9018882
Alignment:
| Q |
343 |
taatttcagaaaatggaagtaattgaatgtaaccaca |
379 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||| |
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| T |
9018918 |
taatttgagaaaatgaaagtaattgaatgtaaccaca |
9018882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 44572683 - 44572654
Alignment:
| Q |
171 |
gacacgacactgacacggatacgtcgacac |
200 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44572683 |
gacacgacactgacacggatacgtcgacac |
44572654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Complemental strand, 38685340 - 38685311
Alignment:
| Q |
350 |
agaaaatggaagtaattgaatgtaaccaca |
379 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
38685340 |
agaaaatggaagtaattgaatgtaaccaca |
38685311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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