View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17827_high_4 (Length: 366)
Name: NF17827_high_4
Description: NF17827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17827_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 342
Target Start/End: Original strand, 38180399 - 38180711
Alignment:
| Q |
30 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtag |
129 |
Q |
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| T |
38180399 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtag |
38180498 |
T |
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| Q |
130 |
gtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggc |
229 |
Q |
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| T |
38180499 |
gtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggc |
38180598 |
T |
|
| Q |
230 |
gagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttgtgtgaccgtgtagtgg |
329 |
Q |
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| T |
38180599 |
gagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgg |
38180698 |
T |
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| Q |
330 |
gtatgtgatgatg |
342 |
Q |
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| T |
38180699 |
gtatgtgatgatg |
38180711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 342
Target Start/End: Original strand, 38185068 - 38185380
Alignment:
| Q |
30 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtag |
129 |
Q |
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| T |
38185068 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtag |
38185167 |
T |
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| Q |
130 |
gtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggc |
229 |
Q |
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| T |
38185168 |
gcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggc |
38185267 |
T |
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| Q |
230 |
gagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttgtgtgaccgtgtagtgg |
329 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
38185268 |
cagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgg |
38185367 |
T |
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| Q |
330 |
gtatgtgatgatg |
342 |
Q |
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| T |
38185368 |
gtatgtgatgatg |
38185380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 38170594 - 38170897
Alignment:
| Q |
39 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
138 |
Q |
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|||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | | |
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| T |
38170594 |
taagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatg |
38170693 |
T |
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| Q |
139 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
238 |
Q |
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||||||| || | ||||| | || ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| || |
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| T |
38170694 |
tcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtata |
38170793 |
T |
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| Q |
239 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttgtgtgaccgtgtagtgggtatgtgat |
338 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||| || |
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| T |
38170794 |
agtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttat |
38170893 |
T |
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| Q |
339 |
gatg |
342 |
Q |
| |
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|||| |
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| T |
38170894 |
gatg |
38170897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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