View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17827_low_1 (Length: 401)

Name: NF17827_low_1
Description: NF17827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17827_low_1
NF17827_low_1
[»] chr5 (14 HSPs)
chr5 (12-386)||(1058219-1058589)
chr5 (15-378)||(1071030-1071405)
chr5 (198-386)||(1065283-1065471)
chr5 (15-149)||(1065545-1065678)
chr5 (188-386)||(1046223-1046421)
chr5 (218-311)||(1033360-1033453)
chr5 (218-297)||(1043766-1043845)
chr5 (15-98)||(1043980-1044063)
chr5 (218-378)||(1052891-1053051)
chr5 (23-98)||(1053238-1053313)
chr5 (15-96)||(1033595-1033676)
chr5 (15-95)||(1640880-1640960)
chr5 (15-82)||(1046579-1046646)
chr5 (218-386)||(1641080-1641248)
[»] chr3 (2 HSPs)
chr3 (15-96)||(44171371-44171452)
chr3 (15-96)||(44191667-44191748)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 386
Target Start/End: Complemental strand, 1058589 - 1058219
Alignment:
Q  12 tcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058589 tcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatg 1058490  T
Q  112 ttacagaattgtaaaatgtcctagtgccctctaaagcaacattgtattatgtatggtacattgaataattttttaattttggagatatttgtaaagatta 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||| ||||||||||||||||||||||||||||||||||    
T  1058489 ttacagaattgtaaaatgtcctagtgccctctaaagcaaaattgtattatg----gtacattgaagaattttttaattttggagatatttgtaaagatta 1058394  T
Q  212 gtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058393 gtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaatt 1058294  T
Q  312 ctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058293 ctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccat 1058219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 1071405 - 1071030
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgtta 114  Q
    ||||||| ||||||||||||||| ||||| | |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||| | | |||||| ||    
T  1071405 ttcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatttgtacccc-actaagtatgata 1071307  T
Q  115 cagaattgtaaaatgtcctagtgcc------------ctctaaagc-----aacattgtattatgtatggtacattgaataattttttaattttggagat 197  Q
    || ||||| ||||||||||||||||            |||||   |     ||||||||||||||     |||||| |||||||| |||||||| ||||     
T  1071306 cataattggaaaatgtcctagtgccagtaacaaaaatctctacgtctcacaaacattgtattatga----tacattaaataatttattaatttttgagac 1071211  T
Q  198 atttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtct 297  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||    
T  1071210 atttgtaaagattagtaaagttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatctgtccttagccgcct 1071111  T
Q  298 gggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgc 378  Q
     || |||||||||| ||| |||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||||    
T  1071110 tggtggtgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgc 1071030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 198 - 386
Target Start/End: Complemental strand, 1065471 - 1065283
Alignment:
Q  198 atttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtct 297  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  1065471 atttgtaaagattagtaaagttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgtccttagccgtct 1065372  T
Q  298 gggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccat 386  Q
     ||||||||||||| ||| | || || |||||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||    
T  1065371 aggcggtgtgaattttgcaatattaaaaccattacttcgaatttgtggtgtgagtgacttgtctgtagatgatattggtgcctgtccat 1065283  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 1065678 - 1065545
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgtta 114  Q
    ||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||| ||||||||||||  ||| | | |||||||||    
T  1065678 ttcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatttgc-gccctagtaagtatgtta 1065580  T
Q  115 cagaattgtaaaatgtcctagtgccctctaaagca 149  Q
     | ||||||||||||||| ||||| ||||||||||    
T  1065579 tataattgtaaaatgtcccagtgctctctaaagca 1065545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 386
Target Start/End: Complemental strand, 1046421 - 1046223
Alignment:
Q  188 ttttggagatatttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatcc 287  Q
    ||||||||| ||| ||||||||  ||   |||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||| |||   |    
T  1046421 ttttggagagattggtaaagataggtgaagttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgatc 1046322  T
Q  288 ttagccgtctgggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccat 386  Q
    ||||||  || || |||||||||| ||  |  ||||||||||| | || || | ||||||||||| | |||||||||| |||||||||||| |||||||    
T  1046321 ttagcctccttggtggtgtgaattgtgatatttcaataccattgcctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccat 1046223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 1033453 - 1033360
Alignment:
Q  218 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaatt 311  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  || |||||||||||| ||||||||| ||| || |||| |||||    
T  1033453 ttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt 1033360  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 1043845 - 1043766
Alignment:
Q  218 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtct 297  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |  |||||||||||| | |||||||||||    
T  1043845 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgtgcttagccgtct 1043766  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 1044063 - 1043980
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacc 98  Q
    ||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||| |||||||| ||| |||||||||||    
T  1044063 ttcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcacc 1043980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 1053051 - 1052891
Alignment:
Q  218 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcga 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||| ||| | |||||||  || ||  ||||||||| ||  |    
T  1053051 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttagcctcctcggttgtgtgaattgtggca 1052952  T
Q  318 catcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgc 378  Q
      | || ||||| || || || ||||||||||||| | |||| ||| | ||||||||||||    
T  1052951 tttgaaaaccatcacctccaatttgtggtgtgagtagtttgtttgttgaagatattggtgc 1052891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 1053313 - 1053238
Alignment:
Q  23 atctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacc 98  Q
    ||||||||||||||| |||| || |||||||| ||| ||||||||||||||||||||||| ||| |||||||||||    
T  1053313 atctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctacaatttgcacc 1053238  T

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Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 1033676 - 1033595
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca 96  Q
    ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| | |||||| |||||||| |||||||||||||    
T  1033676 ttcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaacctgcaatttgca 1033595  T

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Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 1640880 - 1640960
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgc 95  Q
    ||||||| ||||||||| ||||||||||||| ||| || | |||||||||||| ||||| |||||||| ||||||||||||    
T  1640880 ttcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaacctgcaatttgc 1640960  T

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Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 1046646 - 1046579
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaa 82  Q
    ||||||| ||||||||||||||||||||||| ||| ||| |||||||| | |||||||||||||||||    
T  1046646 ttcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaa 1046579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 386
Target Start/End: Original strand, 1641080 - 1641248
Alignment:
Q  218 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcga 317  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||| |     |||||||||    ||||||| || || || |||||||| |  || |    
T  1641080 ttaccagctgctatagcattccttgcagcaagtctgaagtcattgacgatacgaggaatttcacaggtccttaggcgccttggtggtgtgaacttagcta 1641179  T
Q  318 catcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccat 386  Q
     |||||| ||||| ||||||  ||||||| |||||| | |||  |||| ||||||||||||||| ||||    
T  1641180 tatcaatgccattgcttcgagtttgtggtttgagtgacatgttagtagaagatattggtgcctgcccat 1641248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 44171371 - 44171452
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca 96  Q
    ||||||| ||| ||||||||||| ||||||| |||||||| ||| ||||| ||||| || |||||||| |||||||||||||    
T  44171371 ttcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgca 44171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 44191667 - 44191748
Alignment:
Q  15 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca 96  Q
    ||||||| ||| ||||||||||| ||||||| |||||||| ||| ||||| ||||| || |||||||| |||||||||||||    
T  44191667 ttcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgca 44191748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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