View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17827_low_2 (Length: 305)
Name: NF17827_low_2
Description: NF17827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17827_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 41562827 - 41563126
Alignment:
| Q |
1 |
aaagaggatgtgaagagggctattgaagatcttatggagaatggtgtggaaggagaacagagaagaaacaaagctaaagagataaaagatatggcttata |
100 |
Q |
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| T |
41562827 |
aaagaggatgtgaagagggctattgaaaatcttatggagaatggtgtggaaggagaacagagaagaaacaaagcaaaagagataaaagatatggcttata |
41562926 |
T |
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| Q |
101 |
aggctgttgaagatggtggatcttctgattcaaattgcaaattgtttataca--agaaattgtagagaaaagttcataatcaatgattaagcataccaaa |
198 |
Q |
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| T |
41562927 |
aggctgttgaagatggtggatcttctgattcaaattgcaaattgtttatacaagagaaattgtagagaaaagttcataatcaat-attaagcataccaaa |
41563025 |
T |
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| Q |
199 |
atagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttgactttacaaatttaaagtgacaaataagtctttaatgatgatgt |
298 |
Q |
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| T |
41563026 |
aaagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttgactttacaaatttaaagtgacacataagtctttaatgatgatgt |
41563125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 46657195 - 46657264
Alignment:
| Q |
108 |
tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagaaaagttcataa |
177 |
Q |
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| T |
46657195 |
tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagcaaagctcataa |
46657264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 46657126 - 46657173
Alignment:
| Q |
10 |
gtgaagagggctattgaagatcttatggagaatggtgtggaaggagaa |
57 |
Q |
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| T |
46657126 |
gtgaagaaggctattgaaaagcttatggtgaatggtgtggaaggagaa |
46657173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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