View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_15 (Length: 390)
Name: NF17828_high_15
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 44610419 - 44610782
Alignment:
| Q |
13 |
aaaatttgtagatgccgtagagggattctcagtgtaattataaaatcatcagttgacgtagatcatgggacgattgatcattgagtgttgtaaataatag |
112 |
Q |
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| T |
44610419 |
aaaatttgtagatgccgtagagggattctcagtgtaattataaaatcatcagttgacgtagatcatgggacgattgatcattgagtgttgtaaataatag |
44610518 |
T |
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| Q |
113 |
tgtaaatagtaatatgtttaagttacttttannnnnnnnatgcggctcgttaagtaagcccgttagatttagattattatctatttaaactcagctctcg |
212 |
Q |
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| T |
44610519 |
tgtaaatagtaatatgtttaagttacttttattttttttatgcggctcgttaagtaagcccgttagatttagattattatctatttaaactcagctctcg |
44610618 |
T |
|
| Q |
213 |
tatcattttgattattattgaaaccaacccatcactgcagtctgctactacgaaagttgaaatgataaccaagttccatggctaaatcagtattaaaact |
312 |
Q |
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| T |
44610619 |
tatcattttgattattattgaaaccaacccatcactgcagtctgctactacgaatgttgaaatgataaccaagttccatggctaaatcagtattaaaact |
44610718 |
T |
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| Q |
313 |
catgtcttaattcatcaaattacataacaactgtaaataacaagcagtatataacacacaaaac |
376 |
Q |
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| T |
44610719 |
catgtcttaattcatcaaattacataacaactgtaaataacaagcagtatataacacacaaaac |
44610782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 44143896 - 44143977
Alignment:
| Q |
295 |
taaatcagtattaaaactcatgtcttaattcatcaaattacataacaactgtaaataacaagcagtatataacacacaaaac |
376 |
Q |
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| T |
44143896 |
taaatcagtattaaaactcatgttttaattcatcaaattacataacaactgtaaataacaagcagtatataacacactaaac |
44143977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 262
Target Start/End: Original strand, 44143857 - 44143888
Alignment:
| Q |
231 |
tgaaaccaacccatcactgcagtctgctacta |
262 |
Q |
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| T |
44143857 |
tgaaaccaacccatcactgcagtctgctacta |
44143888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 27905277 - 27905230
Alignment:
| Q |
95 |
gagtgttgtaaataatagtgtaaatagtaatatgtttaagttactttta |
143 |
Q |
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| T |
27905277 |
gagtgttgtaaataatagtgtaaatagtaatatatttaa-ttactttta |
27905230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 12260515 - 12260562
Alignment:
| Q |
294 |
ctaaatcagtattaaaactcatgtcttaattcatcaaattacataaca |
341 |
Q |
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| T |
12260515 |
ctaaatcagaactaaaattcatgtcttcattcatcaaattacataaca |
12260562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 3147368 - 3147324
Alignment:
| Q |
98 |
tgttgtaaataatagtgtaaatagtaatatgtttaagttactttta |
143 |
Q |
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| T |
3147368 |
tgttgtaaataatagtgtaaacagtaatatattt-agttactttta |
3147324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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