View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17828_high_19 (Length: 334)
Name: NF17828_high_19
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 41096008 - 41096329
Alignment:
| Q |
1 |
cttttgcatatttatttcatttaactctcagcaagaagcacccaacattgctttttgtcaattctgaggtattgatagttcnnnnnnnnnnnnnnctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
41096008 |
cttttgcatatttatttcatttaactctcagcaagaagcacccaacattgctttt-gtcaattctgaggtattgatagttcacaaaaaaaa----ctttg |
41096102 |
T |
|
| Q |
101 |
attatacggccaannnnnnngtatagccatgttataagtacgatgtagagactaatttccgtcagagaatctattgggcaaacaagatgggttttttcat |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41096103 |
attatacggccaatttttttgtatagccatgttataagtacgatgtagagactaatttccgtcagagaacctattgggcaaacaagatgggttttttcat |
41096202 |
T |
|
| Q |
201 |
tccgagtggatattctatatacacaatagtcaaggatcgaactcggttgaccacttgcttaaggtgcccaagtctcttaccacttgattatacaaccaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41096203 |
cccgagtggatattctatatacacaatagtcaaggatcgaactcggttgaccacttgcttaaggttcccaagtctcttaccacttgattatacaaccaac |
41096302 |
T |
|
| Q |
301 |
tagtaactaaggtcgcaacctatgata |
327 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
41096303 |
tagtaactaaggtcgcaacctaagata |
41096329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University