View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_23 (Length: 313)
Name: NF17828_high_23
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 23097378 - 23097529
Alignment:
| Q |
144 |
cggcgatggagccgaataactcctggacgaagatgatttagagaatgcacttcctcccattctacctccggatggtgctgctaaggatgtgtttggattg |
243 |
Q |
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| T |
23097378 |
cggcgatggagccgaataactcctggacgaagatgatttagagaatgcacttcctcccattctacctccggatggtgctgctaaggacgtgtttggattg |
23097477 |
T |
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| Q |
244 |
tacgtagtcaatagaattcctgttaataatatcgcggctaccacgggttttc |
295 |
Q |
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| T |
23097478 |
tacgtagtcaatagaattcctattaataatatcgcggctaccacgggttttc |
23097529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 112 - 295
Target Start/End: Original strand, 11828142 - 11828322
Alignment:
| Q |
112 |
ctccaggacgatgaagacgaagacgaagaactcggcgatggagccgaataactcctggacgaagatgatttagagaatgcacttcctcccattctacctc |
211 |
Q |
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| T |
11828142 |
ctcctggaccatgaagacgaagacgaaga------cgatggagccgaataactcctggacgaagatgatttagagaatgcacttcctcccattctacctc |
11828235 |
T |
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| Q |
212 |
cggatggtgctgctaaggatgtgtttggattgtacgtagtcaat---agaattcctgttaataatatcgcggctaccacgggttttc |
295 |
Q |
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| T |
11828236 |
cagatggtgctgctaaggacgtgtttggattgtacgtagtcaatagaagaattcctattaataatatcgcggctaccgcgggttttc |
11828322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 23097218 - 23097346
Alignment:
| Q |
11 |
cacagaaacacactaccgctaaggtgagaaatccagcatcatcaaatgcatcaaatccagcaccaactctaacaccaacggcaggcgatggaaccgaata |
110 |
Q |
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| T |
23097218 |
cacagaaacacactaacgctaaggtgagaaatccagcatcatcaaatgcatcaaatccagcaccaactctaacaccaacggcaggcgatggaaccgaata |
23097317 |
T |
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| Q |
111 |
actccaggacgatgaagacgaagacgaag |
139 |
Q |
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| T |
23097318 |
actccaggacgatgaagacgaagacgaag |
23097346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 1493782 - 1493714
Alignment:
| Q |
94 |
ggcgatggaaccgaataactccaggacgatgaagacgaagacgaagaactcggcgatggagccgaataa |
162 |
Q |
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| T |
1493782 |
ggcgatggaaccgaataactccaggacgatgaagacgaagacgaagaactcggcgatggagccgaataa |
1493714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 1493886 - 1493840
Alignment:
| Q |
50 |
catcaaatgcatcaaatccagcaccaactctaacaccaacggcaggc |
96 |
Q |
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| T |
1493886 |
catcagatgcatcaaatccagcaccaactctaacaccaacggcaggc |
1493840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 47344072 - 47343990
Alignment:
| Q |
183 |
agagaatgcacttcctcccattctacctccggatggtgctgctaaggatgtgtttggattgtacgtagtcaatagaattcctgttaata |
271 |
Q |
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| T |
47344072 |
agagaatgatcttcctccaattctacctccagatg---ctgctaaggacgtgtttggattgtac---atcaatagaattcctattaata |
47343990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 47344119 - 47344075
Alignment:
| Q |
97 |
gatggaaccgaataactccaggacgatgaagacgaagacgaagaa |
141 |
Q |
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| T |
47344119 |
gatggaaccgaataactcctagacgatgaagaggaagacgaagaa |
47344075 |
T |
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