View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_28 (Length: 288)
Name: NF17828_high_28
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 3424936 - 3424683
Alignment:
| Q |
24 |
acataagacacatttaggaaacaaaataagtgtttaccctttgatttcatgctatggggttggatagctccacttatttgagtcaaggttaaggagtttg |
123 |
Q |
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| T |
3424936 |
acataagacacatttaggaaacaaaataagtgtttaccctttgatttcatgctatggggttggatagctccacttatttgagtcaaggttaaggagtgtg |
3424837 |
T |
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| Q |
124 |
aggtcctggttcaaactcaaacaaaggagtatattatattaatttaacaactaaaatatagtaatctacaaaacactagcacaatacgaacactagtagt |
223 |
Q |
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| T |
3424836 |
aggtcctggttcaaactcaaacaaaggagtatattatattaatttaacaactaaa--atagtaatctacaaaacactagcacaatacgaacactagtagt |
3424739 |
T |
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| Q |
224 |
atttgnnnnnnnntgatataattaaatgtaatcacatgtgtcgatattcttggacat |
280 |
Q |
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| T |
3424738 |
atttg-aaaaaaatgatataattaaatgtaatcacatgtgtcgatcttgttggacat |
3424683 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 38487836 - 38487776
Alignment:
| Q |
79 |
ggggttggatagctccacttatttgagtcaagg-ttaaggagtttgaggtcctggttcaaa |
138 |
Q |
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| T |
38487836 |
ggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctggttcaaa |
38487776 |
T |
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