View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_31 (Length: 278)
Name: NF17828_high_31
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 26308346 - 26308095
Alignment:
| Q |
9 |
agtgagaagaagttttgcatatccacacacactatgatacaattatcttaactaaactttcaacaaatnnnnnnnnnngttaatcaaattaacacttatc |
108 |
Q |
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| T |
26308346 |
agtgacaagaagttttgcatatccacacacactatgatacaattatcttaactaaactttcaacaaataaaaaaaaaagttgatcaaattaacacttatc |
26308247 |
T |
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| Q |
109 |
ttctgctccatgagattggaagagtgaagacatgcatacacacaaagtatgttaaatgggagattttctcttgagtgtataagcaatcctgtttgattct |
208 |
Q |
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| T |
26308246 |
ttctgctccatgagattggaagagtgaagacatgcatacacacaaagtatgttaaatgggagattttctcttgagtgtataagcaatcctgtttgattct |
26308147 |
T |
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| Q |
209 |
gtcattgaatctccaagacttgtttctgattcgtgagaaagcctagcacgct |
260 |
Q |
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| T |
26308146 |
gccattgaatctccataacttgtttctgattcgtgagaaagcctagcacgct |
26308095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 26311402 - 26311155
Alignment:
| Q |
15 |
aagaagttttgcatatccacacacactatgatacaattatcttaactaaactttcaacaaatnnnnnnnnnn---gttaatcaaattaacacttatcttc |
111 |
Q |
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| T |
26311402 |
aagaagttttgcatatccaca-acacaacgatacaattatcttaacaaaactatcaacaacttaaaaaaaaaaaagttaatcaaattaacacttatcttc |
26311304 |
T |
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| Q |
112 |
tgctccatgagattggaagagtgaagacatgcatacacacaaagtatgttaaatgggagattttctcttgagtgtataagcaatcctgtttgattctgtc |
211 |
Q |
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| T |
26311303 |
tgctccatgagattggaagagtgaagacatgcatacacacacagtatgttacatgggagattttttcttgatgttataagcaatcctgtttgattctgcc |
26311204 |
T |
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| Q |
212 |
attgaatctccaagacttgtttctgattcgtgagaaagcctagcacgct |
260 |
Q |
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| T |
26311203 |
attgaatctccaagacttgtttctgattcatgagaacgccttgcacgct |
26311155 |
T |
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