View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_33 (Length: 265)
Name: NF17828_high_33
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 32 - 255
Target Start/End: Original strand, 1895465 - 1895688
Alignment:
| Q |
32 |
agaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgatagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtg |
131 |
Q |
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| T |
1895465 |
agaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgatagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtg |
1895564 |
T |
|
| Q |
132 |
atcacaggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatg |
231 |
Q |
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| T |
1895565 |
atcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatg |
1895664 |
T |
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| Q |
232 |
ctgttggtacttctgttcttcttc |
255 |
Q |
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|||||||||||||||||||||||| |
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| T |
1895665 |
ctgttggtacttctgttcttcttc |
1895688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 1901858 - 1902083
Alignment:
| Q |
12 |
atcatcaaaaagcatgtcacagaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgatagaaacatgacaagaagatggtccttttacatgg |
111 |
Q |
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| T |
1901858 |
atcatcaaaa--catgtcacagaaattctgaagttcatcaaggtttgtgattgttgtgcaagtgacagaaacatgacaagaagatggtcactttacatgg |
1901955 |
T |
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| Q |
112 |
atgttttgccaattttagtgatcacaggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgt |
211 |
Q |
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| T |
1901956 |
atgttttgccacctgtggtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgt |
1902055 |
T |
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| Q |
212 |
ctttgttgcttattcttatgctgttggt |
239 |
Q |
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| T |
1902056 |
ctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 1890667 - 1890838
Alignment:
| Q |
84 |
atgacaagaagatggtccttttacatggatgttttgccaattttagtgatcacaggacaggaaactattgaaatggctttactcactttgttcaaagcag |
183 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890667 |
atgagaagaagatggtccttttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
1890766 |
T |
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| Q |
184 |
ccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttc |
255 |
Q |
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| T |
1890767 |
ccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttc |
1890838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 1910960 - 1911142
Alignment:
| Q |
71 |
aagtgatagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtgatcacaggacaggaaactattgaaatggctttactcact |
170 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||| ||||| | ||||| | | | | ||| |||||| ||||||||||||||| |
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| T |
1910960 |
aagtgacagaaacatgacaagaagatggtccttgtacatggatgttctgccacctgctgtgattatatgctatgaatgtattgacatggctttactcact |
1911059 |
T |
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| Q |
171 |
ttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttct |
253 |
Q |
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| T |
1911060 |
ttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttct |
1911142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 255
Target Start/End: Original strand, 1878003 - 1878182
Alignment:
| Q |
76 |
atagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtgatcacaggacaggaaactattgaaatggctttactcactttgtt |
175 |
Q |
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||||||| |||||||||||||||||||||||||||||| || | |||||| | ||||| || | | ||| | ||| |||||||| ||| ||| | |
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| T |
1878003 |
atagaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgacgtggctttagtcattttata |
1878102 |
T |
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| Q |
176 |
caaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttc |
255 |
Q |
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||||||||||||| |||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
1878103 |
caaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttc |
1878182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 255
Target Start/End: Original strand, 1884015 - 1884194
Alignment:
| Q |
76 |
atagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtgatcacaggacaggaaactattgaaatggctttactcactttgtt |
175 |
Q |
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||||||| |||||||||| | ||||||||||||||||| || ||||| | | ||||| | ||| | ||| | |||| ||||||||||| |||||||| |
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| T |
1884015 |
atagaaagatgacaagaaaacggtccttttacatggattttctgccacctgttgtgattataggcaatgaatgtgttgacatggctttactgactttgtt |
1884114 |
T |
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| Q |
176 |
caaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttc |
255 |
Q |
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| T |
1884115 |
caaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttc |
1884194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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