View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_36 (Length: 257)
Name: NF17828_high_36
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 32500475 - 32500605
Alignment:
| Q |
111 |
ttgctgtatttttctctcaatatacggatgtgggacttaaaaactactatcatattacaatgaagttttaccacgaaagacttttgaaccaacttggtag |
210 |
Q |
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| T |
32500475 |
ttgctgtatttttctctcaatatacggatgtgggacttaaaaactactatcatattacaatgaagttttaccacgaaagacttttgaaccaacttggtag |
32500574 |
T |
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| Q |
211 |
ttaatttcaacaagaaaatgaccttcaattt |
241 |
Q |
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| T |
32500575 |
ttaatttcaacaagaaaatgaccttcaattt |
32500605 |
T |
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Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 32500308 - 32500405
Alignment:
| Q |
13 |
aatatatcaaagcttacaaattaataattaataacataaccaacacaattacaaaagcatatgcacaatatagttaatggaagaaaactagttcctaa |
110 |
Q |
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| T |
32500308 |
aatatatcaaagcttacaaattaataactaataacataaccaacacaattacaaaagcatatgcacaatatagttaatggaagaaaactagttcctaa |
32500405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 32504378 - 32504447
Alignment:
| Q |
114 |
ctgtatttttctctcaatatacggatgtgggacttaaaaactactatcatattacaatgaagttttacca |
183 |
Q |
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| T |
32504378 |
ctgtatttttctctggatgtgccgatgtgggacttaaaaactactaccatattacaatgaagttttacca |
32504447 |
T |
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