View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_high_53 (Length: 213)
Name: NF17828_high_53
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 38292401 - 38292583
Alignment:
| Q |
14 |
attattctcctcaaccatttcatcaatctacaaggtattattattgaaaatgatatcattatagattttcaaattacccaaatcgatgcatgccaaatca |
113 |
Q |
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| T |
38292401 |
attattctcctcaaccatttcatcaatctacatggtattattattgaa--tgatatcattatagattttcaaattacccaaatcgatgcatgccaaatca |
38292498 |
T |
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| Q |
114 |
accaacaatcctttctaagtttcatgtttctcgcctccccacttcaactttcaaaatgaacaaacaaa--ttgaggggtaatgat |
196 |
Q |
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| T |
38292499 |
accaccaatcctttctaagtttcatgttcctcgcctccccacttcaactttcaaaatgaacaaacaaattttgaggggtaatgat |
38292583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 39611160 - 39610995
Alignment:
| Q |
19 |
tctcctcaaccatttcatcaatctacaaggtattattattgaaaatgatatcattat-agattttcaaattacccaaatcgatgcatgccaaatcaacca |
117 |
Q |
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| T |
39611160 |
tctcttcaatcatatcatcaatctccttggtactattattgaaaattttatcatttttagatttccaaatcattcaaagtgttgcatgtcaaatcgacct |
39611061 |
T |
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| Q |
118 |
acaatcctttctaagtttcatgtttctcgcctccccacttcaactttcaaaatgaacaaacaaatt |
183 |
Q |
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| T |
39611060 |
tcaacctttttgaagtttcttatgtctcacctccccactccaacattcaaaatggacaaacaaatt |
39610995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 13854166 - 13854199
Alignment:
| Q |
147 |
cctccccacttcaactttcaaaatgaacaaacaa |
180 |
Q |
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| T |
13854166 |
cctccccactccaactttcaaaatgaacaaacaa |
13854199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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