View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_11 (Length: 441)
Name: NF17828_low_11
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 39 - 441
Target Start/End: Complemental strand, 52063098 - 52062697
Alignment:
| Q |
39 |
gttaggaacttttatatgtatggctaaaagaaactgctagctaacttgtatttacatcaaattgttatcagaattatcagttttgggctaaagcagatga |
138 |
Q |
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| T |
52063098 |
gttaggaacttttatatgtatggctaaaagaaactgctagctaacttgtatttacatcaaattgttatcagaattatcagttttgggctaaagcagatga |
52062999 |
T |
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| Q |
139 |
tgatggctatttctcgattagcaatatacatgttggcgactataatttttatgcatgggtgcctggttttattggtgactataaatatgatgtagtaatt |
238 |
Q |
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| T |
52062998 |
tgatggctatttctcgattagcaatatacatgttggtgactataatttttatgcatgggtgcctggttttattggtgactataaatatgatgtagtaatt |
52062899 |
T |
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| Q |
239 |
agcataacagaaggtattaattcatcaatcaatttagttattttcttttataaactgcagacaatttttgtgttaattagtgtttgtgtattttgtttat |
338 |
Q |
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| T |
52062898 |
agcataacagaaggtattaattcatcaatcaatttagttattttcttttataaactgcagacaatttttgtgttaattagtg-ttgtgtattttgtttat |
52062800 |
T |
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| Q |
339 |
gtgaaattaaacaggctgtgacatagatattggtgatcttgtttatgagccaccaagagatggcccaacattgtgggaaataggcatccccgatcgctca |
438 |
Q |
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| T |
52062799 |
gtgaaattaaacaggctgtgacatagatattggtgatcttgtttatgagccaccaagagatggcccaacattgtgggaaataggcatccccgatcgctca |
52062700 |
T |
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| Q |
439 |
gct |
441 |
Q |
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| T |
52062699 |
gct |
52062697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 52047960 - 52047889
Alignment:
| Q |
370 |
ggtgatcttgtttatgagccaccaagagatggcccaacattgtgggaaataggcatccccgatcgctcagct |
441 |
Q |
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| T |
52047960 |
ggtgagcttgtttatgagccaccaagacatggccctacactgtgggaaataggcatccctgatcgctcagct |
52047889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 52069459 - 52069404
Alignment:
| Q |
370 |
ggtgatcttgtttatgagccaccaagagatggcccaacattgtgggaaataggcat |
425 |
Q |
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| T |
52069459 |
ggtgaacttgtatatgaacctccaagggatggccccacattgtgggaaataggcat |
52069404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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