View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_13 (Length: 423)
Name: NF17828_low_13
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 48278825 - 48279165
Alignment:
| Q |
1 |
aaaaagacaaaataacttgcagaagaggaaaggaagacattatcgagtatgtatgaaaagtttaatatcgtttaaaatttg----tgaataatgtttatt |
96 |
Q |
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| T |
48278825 |
aaaaagacaaaatcacttgcagaagaggaaaggaggacattgtcaagtatgtatgaaaagtttaatatcgtttaaaatttgtttgtgaataatgtttatt |
48278924 |
T |
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| Q |
97 |
gcacagaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttttgtg |
196 |
Q |
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| T |
48278925 |
gcacagaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttatgtg |
48279024 |
T |
|
| Q |
197 |
tcattattgtgtctggtatcgatgtatgtgtatgtgcttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatgacaaccctt |
296 |
Q |
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| T |
48279025 |
tcattactgtgtctggtatcgatgtatgtgtatgtgcttcataagtgtagactatgttttctattgggaaacctaaaagcgcaacaatatgacaaccctt |
48279124 |
T |
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| Q |
297 |
caccatgatcattcttttccatgcggaatggttagtgctcc |
337 |
Q |
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| T |
48279125 |
catcatgatcattcttttccacgcggaacggttagtactcc |
48279165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 13810560 - 13810516
Alignment:
| Q |
149 |
tgtctgacacctacacatttgattatgttcaataaatttattttt |
193 |
Q |
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| T |
13810560 |
tgtctgacaccgacacatgtgattacgttcaataaattcattttt |
13810516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 40388332 - 40388666
Alignment:
| Q |
1 |
aaaaagacaaaataacttgcagaagaggaaaggaagacattatcgagtatgtatgaaaagtttaatatcgtttaaaatttgtgaataatgtttattgcac |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40388332 |
aaaaagacaaaatcacttgcagaagaggaaaggaagacattgtcaagtatgtatgaaaagtttattatcgtttaaaatttgtgaataatgtttattgcac |
40388431 |
T |
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| Q |
101 |
agaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttttgtgtcat |
200 |
Q |
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| T |
40388432 |
agaatatatttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaattta--tttgtgtcat |
40388529 |
T |
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| Q |
201 |
tattgtgtctggtatcgatgtatgtgtatgtgcttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatgacaacccttcacc |
300 |
Q |
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| T |
40388530 |
tattgtgtctcgtatctgtgtatatgtatgtgcttcataagtgtagactatgtttcctattggggaacctaaaagcgcaacaatatgacaacccttcacc |
40388629 |
T |
|
| Q |
301 |
atgatcattcttttccatgcggaatggttagtgctcc |
337 |
Q |
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| T |
40388630 |
atgatcattcttttccacacggaacggttagtactcc |
40388666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 29632747 - 29633077
Alignment:
| Q |
1 |
aaaaagacaaaataacttgcagaagaggaaaggaagacattatcgagtatgtatgaaaagtttaatatcgtttaaaatttgtgaataatgtttattgcac |
100 |
Q |
| |
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| T |
29632747 |
aaaaagacaaaatcacttgcagaagaggaaaggaa-------tcaagtatgtatgaaaagtttaatatcatttaaaatttatgaataatgtttattgcac |
29632839 |
T |
|
| Q |
101 |
agaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttttgtgtcat |
200 |
Q |
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| T |
29632840 |
agaatttacttttaatgaatggcgtgtaacatatatgatgtatgttgatgtctgacacctacacatttgattatgttcaataaatttatttatgtgtcat |
29632939 |
T |
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| Q |
201 |
tattgtgtctggtatcgatgtatgtgtatgtgc-ttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatgacaacccttcac |
299 |
Q |
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|||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29632940 |
tattgtgtatggtatcggtgtatgtgtatgtgctttcataagtgtagactatgttttctgttggggaacctaaaagcgcaacaatatgacaacccttcac |
29633039 |
T |
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| Q |
300 |
catgatcattcttttccatgcggaatggttagtgctcc |
337 |
Q |
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| T |
29633040 |
catgatcattcttttccacgcggaacggttagtactcc |
29633077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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