View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_14 (Length: 411)
Name: NF17828_low_14
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 144 - 393
Target Start/End: Complemental strand, 29421543 - 29421294
Alignment:
| Q |
144 |
cgtactcctgcagtttggtgctaaaaagtaaaccagttgcatgtttattttatgaacaccacttgcaatttttataattatagcatggatcgtgaggaat |
243 |
Q |
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| T |
29421543 |
cgtactcctgcagtttggtgctaaaaagtaaaccagttgcatgtttattttatgaacaccacttgcaatttttataactttagcatggatcgtgaggaat |
29421444 |
T |
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| Q |
244 |
taaaaaattatattatttgtcaaagaagttcagatgtaccatttctttaaatgaaacaattcaaaacaaaaccaacctaatccataagtaccattccttt |
343 |
Q |
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| T |
29421443 |
taaaaaattatattatctgtcaaagaagttcagatgtaccgtttctttaaatgaaacaattcaaaacaaaaccaacctaatccataagtaccattctttt |
29421344 |
T |
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| Q |
344 |
attttatgcatctttcaaaaagaaacataagcaactctttttaaaatatt |
393 |
Q |
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| T |
29421343 |
attttatgcatctttcaaaaagaaacataagcaactctttttaaaatatt |
29421294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 29421679 - 29421611
Alignment:
| Q |
8 |
agtgagatgaaaataaatatgtaggaattttccgcgtgtgtttatttgagtatgagtttgtcattaatt |
76 |
Q |
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| T |
29421679 |
agtgatatgaaaataaatacgtaggaattttccgcgtgtgtttatttgagtatgagtttgtcattaatt |
29421611 |
T |
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