View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_15 (Length: 411)
Name: NF17828_low_15
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 44293848 - 44294014
Alignment:
| Q |
1 |
tcatcagaaccactggatcatgcccctataatatggaccccactagtagtggggtaaaaaatagatagtcagaacaattttcactgtgacatagacagtg |
100 |
Q |
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| T |
44293848 |
tcatcagaaccactggatcatgcccctataatatggaccccactagtaatggggtaaaaaatagatagtcggaacaattttcactgtgacatagacagtg |
44293947 |
T |
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| Q |
101 |
acatgagtcataaaatgaaatgaaagaagcacaagttttctttttcaccacacaatatttattattt |
167 |
Q |
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| T |
44293948 |
acatgagtcataaaatgaaatgaaagaagcacaagttttctttttcaccacacaatatttattattt |
44294014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 231 - 393
Target Start/End: Original strand, 44294267 - 44294430
Alignment:
| Q |
231 |
gcttgaagcttttgcatcgcattctaaa-caaaacaaagcccacaaattttgacccttaatccaacgctctctgattcagctaaatgcaaatgaacagtt |
329 |
Q |
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| T |
44294267 |
gcttgaagcttttgcatcgcattctaaaacaaaacaaagcccacaaattttgacccttaatccaacgctctctgattcagctaaatgcaaatgaacagtt |
44294366 |
T |
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| Q |
330 |
tccatttctgggtcttaccctttttctctttctctctccctgcttagtttcaaccagcaggagg |
393 |
Q |
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| T |
44294367 |
tccatttctgggtcttactctttttctctttctctctccctgcttagtttcaaccagcaggagg |
44294430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 44294195 - 44294236
Alignment:
| Q |
159 |
ttattatttttatttcctcagctcaaaaactgaaaaaccaca |
200 |
Q |
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| T |
44294195 |
ttattatttttatttcctcagctcaaaaactgaaaaaccaca |
44294236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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