View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17828_low_17 (Length: 374)

Name: NF17828_low_17
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17828_low_17
NF17828_low_17
[»] chr4 (9 HSPs)
chr4 (18-356)||(54304045-54304383)
chr4 (24-201)||(47293438-47293609)
chr4 (31-201)||(55705863-55706027)
chr4 (44-183)||(45876748-45876881)
chr4 (44-201)||(56208543-56208694)
chr4 (44-146)||(45858817-45858919)
chr4 (243-337)||(45878693-45878780)
chr4 (232-273)||(56208883-56208924)
chr4 (285-337)||(45860212-45860264)
[»] chr5 (3 HSPs)
chr5 (42-144)||(35854575-35854677)
chr5 (42-133)||(10521345-10521436)
chr5 (284-337)||(35802756-35802809)
[»] chr2 (1 HSPs)
chr2 (44-145)||(24357487-24357588)
[»] chr8 (2 HSPs)
chr8 (42-191)||(7961716-7961859)
chr8 (42-201)||(7972086-7972239)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 54304383 - 54304045
Alignment:
Q  18 agttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54304383 agttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccga 54304284  T
Q  118 gagatgttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaaggatctattatttgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54304283 gagatgttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaagtatctattatttgg 54304184  T
Q  218 actaaaa-aaccaactaaggtaatattttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatat 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54304183 actaaaagaaccaactaaggtaatattttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatat 54304084  T
Q  317 tgaagcaatgacgggttttttcggcagcaagacgtttcat 356  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  54304083 tgaagcaatgatggg-tttttcggcagcaagacgtttcat 54304045  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 47293609 - 47293438
Alignment:
Q  24 acaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatg 123  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||| || || |  || ||||||||||||||||||||  |||||     
T  47293609 acaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagata 47293510  T
Q  124 ttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 201  Q
     |||||||||||  |||||||       ||| ||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  47293509 ctgcgtccttactggtccaaa------tccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa 47293438  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 55706027 - 55705863
Alignment:
Q  31 taacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtc 130  Q
    ||||||| || |||||||||||||| || ||||||||||  |||||||||||||| || ||||| ||||||||||||||||||||  |||||| ||||||    
T  55706027 taacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtc 55705928  T
Q  131 cttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 201  Q
     ||||| |||||||      ||||||| || | |||||||||||| |||||||| ||||| ||| ||||||    
T  55705927 tttaccggtccaaa------ccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaa 55705863  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 45876748 - 45876881
Alignment:
Q  44 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 143  Q
    |||||||||||| || ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||  | |||| ||| |||||||| ||||||    
T  45876748 ttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccggtccaa 45876847  T
Q  144 accttccccctcccctgtggaacctcttccattttgtcta 183  Q
    |      ||||||| |||| |||||||||||| |||||||    
T  45876848 a------ccctcccttgtgcaacctcttccatcttgtcta 45876881  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 56208543 - 56208694
Alignment:
Q  44 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 143  Q
    ||||||||||   |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||  ||| || ||||| ||| ||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa 56208642  T
Q  144 accttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 201  Q
    |      |||||||||||| |||||||||||| |  ||||| ||||||||| ||||||    
T  56208643 a------ccctcccctgtgcaacctcttccatctcatctatagtcattgatctggaaa 56208694  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 45858817 - 45858919
Alignment:
Q  44 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 143  Q
    |||||||||||||||||||||||| ||||||||||||||||| || | ||| |||||||||||||||| |||  |||||  ||| |||||||| ||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  144 acc 146  Q
    |||    
T  45858917 acc 45858919  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 45878693 - 45878780
Alignment:
Q  243 tttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 337  Q
    |||||||||||||||||||||||||| |||| | |||       ||||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  45878693 tttctgcaacaatagctcctgctcccattgccatgta-------gtatcctccacttgctgccacatcagacattgaagcaatgactggtttttt 45878780  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 56208883 - 56208924
Alignment:
Q  232 taaggtaatattttctgcaacaatagctcctgctcccgttgc 273  Q
    |||||||| |||||||||||||||| ||||||||||| ||||    
T  56208883 taaggtaagattttctgcaacaataactcctgctcccattgc 56208924  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 45860212 - 45860264
Alignment:
Q  285 tagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 337  Q
    ||||||||| |||| | |||||||||||| |||||||||||||  ||||||||    
T  45860212 tagtatcctccactagctgccacatcagacattgaagcaatgattggtttttt 45860264  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 35854677 - 35854575
Alignment:
Q  42 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||  |||||| |||||||||||| ||||    
T  35854677 ttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccggtcc 35854578  T
Q  142 aaa 144  Q
    |||    
T  35854577 aaa 35854575  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 10521436 - 10521345
Alignment:
Q  42 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtcctt 133  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||||||  |||||| |||||||||    
T  10521436 ttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtcctt 10521345  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 35802756 - 35802809
Alignment:
Q  284 gtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 337  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  35802756 gtagtatcctgcacttgttgccgcatcagacattgaagcaatgacgggtttttt 35802809  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 24357588 - 24357487
Alignment:
Q  44 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 143  Q
    |||||||||||||||||||||||||||||| |||||||| || || |  || ||||||||||||||||||||  | |||| ||| || ||||||||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  144 ac 145  Q
    ||    
T  24357488 ac 24357487  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 7961716 - 7961859
Alignment:
Q  42 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 141  Q
    |||||||| ||||||||||||||||||||||||||||||||  | || || || ||||||||||| |||||| |   |||| |||| || ||||||||||    
T  7961716 ttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtcc 7961815  T
Q  142 aaaccttccccctcccctgtggaacctcttccattttgtctattgtcatt 191  Q
    |||  ||    ||||| |||| |||||||||||| |||||||| ||||||    
T  7961816 aaa--tt----ctcccttgtgcaacctcttccatcttgtctatagtcatt 7961859  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 7972086 - 7972239
Alignment:
Q  42 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 141  Q
    |||||||| | ||||||||||||||||||||||||||||||||| || |  || |  |||||||| ||||||||   ||||  ||| || ||||| ||||    
T  7972086 ttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccggtcc 7972185  T
Q  142 aaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 201  Q
    |||       ||||| ||||| |||||||||||| |||||||  ||||||||| ||||||    
T  7972186 aaa------tcctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaa 7972239  T

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