View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17828_low_2 (Length: 723)
Name: NF17828_low_2
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_2 |
 | |
|
| [»] scaffold0555 (1 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
| [»] scaffold0321 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 703
Target Start/End: Original strand, 34824798 - 34825478
Alignment:
| Q |
16 |
aatatttaccgaatagatcaaactaattactctatagctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34824798 |
aatatttaccgaatagatcaaactaattactctatagctcatttggttactatgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataa |
34824896 |
T |
|
| Q |
116 |
tatccaaacatccattgaaggtttatcagaaaaagaaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaagg |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34824897 |
tattcaaacatccattgaaggtttatcagaaaaagtaaaattacattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaagg |
34824996 |
T |
|
| Q |
216 |
tggtggtcggaccctatgctttgtttgggtatcgacgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatc |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34824997 |
tggtggttggaccctatgctttgtttgggtatcgacgcacccgatttattgtaattactacatttgtttgactctttcaggactgacttcttagtacatc |
34825096 |
T |
|
| Q |
316 |
ttgtacttaggaggcttcaccgtctttgttaatatataccatttttgtttcttnnnnnnnnnnncctaattactctataatattacatttcatattcatt |
415 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34825097 |
ttgtatttaggaggcttcaccg-ctttgttaatatatatcatttttgtttctt--aaaaaaaaacctaattattctataatattacatttcatattcatt |
34825193 |
T |
|
| Q |
416 |
tatttcaatatttcaaggacatatattgagcctttttgagaatgcatgtgatggtagcactaaacgacactatctacnnnnnnncttctcataaagataa |
515 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34825194 |
tatttcaatatttcaaggacatatgttgagcctttttgagaatgcatgtgatggtagcactaaacgacactatctacaaaaaaacttctcataaagataa |
34825293 |
T |
|
| Q |
516 |
gctagaacgcaaattcaatgggttccacaaacgctatcagaatttatgtaaatcgtattacaaattacagaattgttttgattttatgtcgttcaaatat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34825294 |
gctagaacgcaaattcaatgggttccacaaacgctatcagaatttatgtaaatcgtattacaa---acagaattgttttgattttatgtcgttcaaatat |
34825390 |
T |
|
| Q |
616 |
attccagattcaacgtctgaaaatatatcacttagtaatttattataggtatatcttagaacacatccattagtttttacgtggaagt |
703 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
34825391 |
attccagattcaacgtctgaaaatatattacttagtaatttattataggtatatattagaacacattcattagtttttacgtggaagt |
34825478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 56 - 368
Target Start/End: Complemental strand, 49458510 - 49458199
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaagaaaaa |
155 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
49458510 |
atttggttgctttgtgtgtgg-atggtttgaaatgaacgcaacaaatgactttttaataatatccaaacattcattgaaggtttatcagaaaaagtaaaa |
49458412 |
T |
|
| Q |
156 |
ttatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgacgcac |
255 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49458411 |
ttatattctttatggtggctaaaagctagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgcattgtttgggtatcgacgcat |
49458312 |
T |
|
| Q |
256 |
ccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatatatacc |
355 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
49458311 |
ccgatttattgtaattactacatttatttgactcttgcaggggtgacttcttagtacatcttgtatttaggaggcttcaccgcctttgttaatatatacc |
49458212 |
T |
|
| Q |
356 |
atttttgtttctt |
368 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49458211 |
atttttgtttctt |
49458199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 51 - 368
Target Start/End: Original strand, 3545456 - 3545772
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
3545456 |
agctcatttggttactttgtgtatgg-atggtttgaaatgaaagcaacaacaaactttttaataatacccaaacatccattgaaggcttatcagaaaaag |
3545554 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||| | || |||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
3545555 |
taaaattacactctttatggtggctaaaagctagtaaagccacatttatataaggttctcaaaggtggtggtcggatcctatgctttgtttaggtatcga |
3545654 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatat |
350 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
3545655 |
cgcacccggtttattgtaattactacatttgtttgactctttgaggggtgacttcttaatatatcttatacttaggaggttttaccgtctttgttaatat |
3545754 |
T |
|
| Q |
351 |
ataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3545755 |
ataccatttttgtttctt |
3545772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 56 - 368
Target Start/End: Original strand, 1248946 - 1249255
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaagaaaaa |
155 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| |||||||||||||||| || ||||||||| |||||||| ||||| |||| ||||| | ||||| ||| |
|
|
| T |
1248946 |
atttggttactttgtgtgtgg-atgatttggaatgaacgcaacaacaaacattttaataacatccaaacctccatcgaagatttattacaaaaattaaa- |
1249043 |
T |
|
| Q |
156 |
ttatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgacgcac |
255 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| | ||||||||||||||| | ||||||||||||| |||||||| || | ||||||||||||||| | |
|
|
| T |
1249044 |
ttacattctttatggtggctaaaagctagtaatggcacatttgtgtacggctctcaaaggtggtggccggaccctctgttatgtttgggtatcgactgat |
1249143 |
T |
|
| Q |
256 |
ccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatatatacc |
355 |
Q |
| |
|
|| ||| ||||||||||| || || ||||| ||| ||| ||||| ||||||||||||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
1249144 |
cctgttt-ttgtaattactgtatctgtatgactgtttgaggggtgacctcttagtacatcttgtactaaggaggcttcgaggcctttgttaatatatacc |
1249242 |
T |
|
| Q |
356 |
atttttgtttctt |
368 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
1249243 |
atttttgtgtctt |
1249255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 34821591 - 34821506
Alignment:
| Q |
387 |
actctataatattacatttcatattcatttatttcaatatttcaaggacatatattgagcctttttgagaatgcatgtgatggtag |
472 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34821591 |
actctataatattacatttcaaattcagttatttcaatatttcaaggacatatgttgagcctttttgagaatgcatgtgatggtag |
34821506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 38204340 - 38204421
Alignment:
| Q |
170 |
gtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||||||| || ||| || ||||||||||||| | ||||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
38204340 |
gtggctaaaagctaataatgctacatttgtgtacgactcgcaaagatggtggtcggaccctttgatttgtttgggtatcgac |
38204421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 13868175 - 13868366
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaagaaaaa |
155 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||| || || ||||||| |||||||||||||||| |||| ||| || | |||||| ||| |
|
|
| T |
13868175 |
atttggttactatgtgtttggt-tggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtaaaaaaagttaaa |
13868273 |
T |
|
| Q |
156 |
ttatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatc |
248 |
Q |
| |
|
| | ||||| ||||||||||||| || ||| |||| ||| |||||||| ||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
13868274 |
tatcactctttgtggtggctaaaagctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttattatgtttgggtatc |
13868366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 7453 - 7137
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
7453 |
agctcatttggttactatgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatatccaaacatcaattgaaggtttatcaggaaaag |
7355 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
|| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7354 |
taagattacattctttatggtggctaaaacctagtaaagccacatttgtgtacggttatcaaaggtggtggtcgaaccctatgctttgtttgggtatcga |
7255 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatat |
350 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
7254 |
agcacccgattttttgtaattactacatttgtttaactctttcaggggtgacttcttaatacatcttggacttaggaggcttcaccgcctttgttaatat |
7155 |
T |
|
| Q |
351 |
ataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7154 |
ataccatttttgtttctt |
7137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 17689783 - 17689467
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
17689783 |
agctcatttggttactttgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaag |
17689685 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
17689684 |
taaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtatcga |
17689585 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatat |
350 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
17689584 |
cgcacccggtttattgtaattactacatttgtttgactctttgaggggtgacttcttagtacatcttgtacttaggaggttttaccgcctttgttaatat |
17689485 |
T |
|
| Q |
351 |
ataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17689484 |
ataccatttttgtttctt |
17689467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 6823108 - 6823001
Alignment:
| Q |
143 |
agaaaaagaaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttg |
242 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| |||||| || ||| ||| ||||||||||||| |||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
6823108 |
agaaaaagcaaaatatcattcgttatggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaaccctttactttgtttg |
6823009 |
T |
|
| Q |
243 |
ggtatcga |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
6823008 |
ggtatcga |
6823001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 7300326 - 7300264
Alignment:
| Q |
189 |
gccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||||||| || | ||||||||||||||| |
|
|
| T |
7300326 |
gccacgtttgtgtgcggttgtcaaagatggtggtcggaccctttgttatgtttgggtatcgac |
7300264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 32624139 - 32624072
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaac |
124 |
Q |
| |
|
||||||||||| ||||| |||| ||||||| || ||||| || || ||||||||||||||||||||||| |
|
|
| T |
32624139 |
atttggttactttgtgtttggg-tggtttggaacgaacgtaataatagactttttaataatatccaaac |
32624072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 19469250 - 19469323
Alignment:
| Q |
59 |
tggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattga |
133 |
Q |
| |
|
|||||||| ||||| |||| | ||||| |||||||||||||| ||| | ||||||||||||||||| ||||||| |
|
|
| T |
19469250 |
tggttactctgtgtctggg-tagtttggaatgaacgcaacaatagaatatttaataatatccaaactaccattga |
19469323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 31265892 - 31265814
Alignment:
| Q |
170 |
gtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatc |
248 |
Q |
| |
|
||||||||||| | ||| |||| |||||||| | || |||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
31265892 |
gtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatc |
31265814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 56 - 368
Target Start/End: Original strand, 6985098 - 6985408
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaagaaaaa |
155 |
Q |
| |
|
||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
6985098 |
atttgattactttgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaacaagtaaaa |
6985196 |
T |
|
| Q |
156 |
ttatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgacgcac |
255 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6985197 |
ttacattctttatggtggctaaaagctagtaaagccacatttgtgtacggttatcaaagatggtggtcggaccctatgctttgtttgggtatcgacgcac |
6985296 |
T |
|
| Q |
256 |
ccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatatatacc |
355 |
Q |
| |
|
||| | |||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
6985297 |
ccggtgtattgtaattactacatttgtttgactcttgcaggggtgacttcttagtacatcttgtactta-gagacttcaccgcctttgttaatatatacc |
6985395 |
T |
|
| Q |
356 |
atttttgtttctt |
368 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6985396 |
atttttgtttctt |
6985408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 3939000 - 3938683
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||| |||||||| || ||||| ||| || ||||| ||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
3939000 |
agcttatttggttgctttgtgtttgg-atcgtttggaatagacgcaacaacatactttttaataatatccaaacatgcatagaaggtttatcagaaaaag |
3938902 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
3938901 |
taaaattacattctttatggtggc-aaaagctagtaaagccacatttgtgtaaggttatcaaaggtggtggtcggaccctatgttatgtttgaatatcga |
3938803 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaata- |
349 |
Q |
| |
|
|| ||||| |||||||||||||||||||| || ||||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3938802 |
cgtacccggtttattgtaattactacatttgtatgactgtttcacgggtgacttcttagtacatcttgtacttaggaggcttcaccgcctttgttaatat |
3938703 |
T |
|
| Q |
350 |
-tataccatttttgtttctt |
368 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3938702 |
atataccatttttgtttctt |
3938683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 40822295 - 40822397
Alignment:
| Q |
266 |
gtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatatataccatttttgttt |
365 |
Q |
| |
|
||||||| |||||| |||||||||||| ||| ||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
40822295 |
gtaattattacatttgtttgactctttaaggggtgacttcttaatatatcttgtacttaggaggtttcaccgcctttgttaatatatactatttttgttt |
40822394 |
T |
|
| Q |
366 |
ctt |
368 |
Q |
| |
|
||| |
|
|
| T |
40822395 |
ctt |
40822397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 39432528 - 39432465
Alignment:
| Q |
59 |
tggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaa |
123 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
39432528 |
tggttactatgtgtctggg-tggtttgaaatgaacgcaacaacataatatttaataatatccaaa |
39432465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 15438790 - 15438755
Alignment:
| Q |
216 |
tggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15438790 |
tggtggtcggaccctatgctttgtttgggtatcgac |
15438755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 15530094 - 15530059
Alignment:
| Q |
216 |
tggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15530094 |
tggtggtcggaccctatgctttgtttgggtatcgac |
15530059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 25192866 - 25192793
Alignment:
| Q |
59 |
tggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattga |
133 |
Q |
| |
|
|||||||| ||||| |||| | ||||| |||||||||||||| ||| | ||||||||||||||||| ||||||| |
|
|
| T |
25192866 |
tggttactttgtgtctggg-tagtttggaatgaacgcaacaatagaatatttaataatatccaaactaccattga |
25192793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-129; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 31674715 - 31674398
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31674715 |
agctcatttggttactatgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatatccaaacatcaattgaaggtttatcagaaaaag |
31674617 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31674616 |
taaaattacattgtttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtggtggtcggactctatgctttgtttgggtatcga |
31674517 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaat-a |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||| | |
|
|
| T |
31674516 |
cgcacccggtttattgtaattactacatttgtttgactctttcaggggtgactgcttagtacatcttgtacttaggagaattcaccgcctttgttaataa |
31674417 |
T |
|
| Q |
350 |
tataccatttttgtttctt |
368 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
31674416 |
tatatcatttttgtttctt |
31674398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 11237591 - 11237274
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||| | ||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
11237591 |
agctcatttggttattttgtgtgtag-atggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagataaag |
11237493 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
|||||| | ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
11237492 |
taaaattgcactctttatggtggctaaaagctagtaaagtcacatttgtgtacggttctcaaaggtggtggtcagatcctatgctttgtttaggtatcga |
11237393 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtc-tttgttaata |
349 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
11237392 |
cgcatccggtttattgtaattactacatttgtttgactctttgaggggtgacttcttaatacatcttgtacttaggaggtttcaccgccttttgttaata |
11237293 |
T |
|
| Q |
350 |
tataccatttttgtttctt |
368 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
11237292 |
tataccatctttgtttctt |
11237274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 51 - 292
Target Start/End: Original strand, 31921705 - 31921945
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31921705 |
agctcatttggttactatgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatatccaaacatcaattgaaggtttatcagaaaaag |
31921803 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31921804 |
taaaattacattctttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtggtggtcgaaccctatgctttgtttgggtatcga |
31921903 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactcttt |
292 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31921904 |
cgcacccggtttattgtaattactacatttgtttgactcttt |
31921945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 29830923 - 29831021
Alignment:
| Q |
270 |
ttactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatatataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
29830923 |
ttactacatttgtttgactctttgaggggtgacttcttagtacatcttgtacttagaaggttttaccgcctttgttaatatataccatttttgtttctt |
29831021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 46249303 - 46249411
Alignment:
| Q |
143 |
agaaaaagaaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttg |
242 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||||||| ||| ||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| |
|
|
| T |
46249303 |
agaaaaagcaaaatatcattcgttatggtggttaaaagttaataacaccaattttgtgtacggttcccaaagatggtggtcggaccctttactttgtttg |
46249402 |
T |
|
| Q |
243 |
ggtatcgac |
251 |
Q |
| |
|
||||||||| |
|
|
| T |
46249403 |
ggtatcgac |
46249411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 20857736 - 20857663
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccat |
130 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||| || || ||||||| |||||||||||||||| |||| |
|
|
| T |
20857736 |
atttggttactatgtgtctggt-tggtttggaatgaacgtaataatagactttataataatatccaaacaaccat |
20857663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 20858008 - 20857940
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaaca |
125 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||| || || ||||||| |||||||||||||||| |
|
|
| T |
20858008 |
atttggttactatgtgtctggt-tggtttggaatgaacgtaataatagactttataataatatccaaaca |
20857940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 52735091 - 52735042
Alignment:
| Q |
316 |
ttgtacttaggaggcttcaccgtctttgttaatatataccatttttgttt |
365 |
Q |
| |
|
|||||||||| | | || |||||||||||||||||||||||||||||||| |
|
|
| T |
52735091 |
ttgtacttagaaagttttaccgtctttgttaatatataccatttttgttt |
52735042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 4964006 - 4963950
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||||||||| ||| || ||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
4964006 |
tttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgac |
4963950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 35216399 - 35216455
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||||||||||| ||| || ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
35216399 |
tttgtgtacggtactcagagatggtggttggaccctatgcattgtttgggtatcgac |
35216455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 21400030 - 21399969
Alignment:
| Q |
190 |
ccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| ||||| | | |||||||||| ||||| |
|
|
| T |
21400030 |
ccacttttgtgtacggttctcaaagttggtggtcgaaccctctacattgtttgggtgtcgac |
21399969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 2364890 - 2364574
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
2364890 |
agctcatttggttactttgtgtgtgg-atggtttgaaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatgagaaaaag |
2364792 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
2364791 |
taaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtatcga |
2364692 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatat |
350 |
Q |
| |
|
|||||||| ||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
2364691 |
cgcacccggtttattgtaataattacatttgtttgactctttgaggggtgacttcttagtacatcttgtacttaggaggttttaccgcctttgttaatat |
2364592 |
T |
|
| Q |
351 |
ataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2364591 |
ataccatttttgtttctt |
2364574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 22532302 - 22531987
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
22532302 |
agctcatttggttactttgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttattagaaaaag |
22532204 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
22532203 |
taaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggttggatcctatgctttgtttaggtatcga |
22532104 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatat |
350 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
22532103 |
cgcactcgatttattgtacttactacatttgtttgactc-ttgaggggtgacttcttagtacatcttgtacttaggaggtttcaccgcctttgttaatat |
22532005 |
T |
|
| Q |
351 |
ataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22532004 |
ataccatttttgtttctt |
22531987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 2710069 - 2710246
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||| ||||||||||| ||||| |||| ||||||| |||||||| || |||||| | |||| || |||||||| ||||||| | | ||||| || |
|
|
| T |
2710069 |
agcttatttggttactttgtgtttggg-tggtttggaatgaacgtaataacagattatttaggaacatccaaactcccattgatcaactgttagaaagag |
2710167 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccc |
229 |
Q |
| |
|
||||| ||||| |||||||||||||||| | |||| ||||| |||||||| |||||||||| |||||||| ||||| |
|
|
| T |
2710168 |
taaaatcttattcgttatggtggctaaaagcttgtaaggccacgtttgtgtatagttatcaaagatggtggtcagaccc |
2710246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 6937034 - 6936978
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||||||||| ||| || ||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
6937034 |
tttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcgac |
6936978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 31706448 - 31706357
Alignment:
| Q |
160 |
attctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||| |||||||||||||||| || ||| ||||| ||||||| ||| | ||| || ||||||||||||| | | |||||||| |||||||| |
|
|
| T |
31706448 |
attcgttatggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgac |
31706357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 2710324 - 2710375
Alignment:
| Q |
308 |
agtacatcttgtacttaggaggcttcaccgtctttgttaatatataccattttt |
361 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
2710324 |
agtacatcttgtacttaggtgg--tcaccgtctttgttaatatatttcattttt |
2710375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 33095619 - 33095557
Alignment:
| Q |
189 |
gccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||||| || | ||| | ||||||||| |
|
|
| T |
33095619 |
gccacttttgtgtacggttctcaaagatggtggtcggaccctttgttatgtctaggtatcgac |
33095557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 22626135 - 22626193
Alignment:
| Q |
308 |
agtacatcttgtacttaggaggcttcaccgtctttgttaatatataccatttttgtttctt |
368 |
Q |
| |
|
||||||||||||||||||| || ||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
22626135 |
agtacatcttgtacttaggtgg--tcatcgtctatgttaatatatttcatttttgtttctt |
22626193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 26513501 - 26513437
Alignment:
| Q |
59 |
tggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaac |
124 |
Q |
| |
|
|||||||| ||||| |||| ||||||| ||||| |||||||||| | |||||||||||| |||||| |
|
|
| T |
26513501 |
tggttactttgtgtctggg-tggtttggaatgaccgcaacaacataatttttaataataaccaaac |
26513437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 475998 - 475682
Alignment:
| Q |
51 |
agctcatttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaaaaag |
150 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
475998 |
agctcatttggttactttgtgtgtgg-atggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaag |
475900 |
T |
|
| Q |
151 |
aaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
475899 |
taaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtatcga |
475800 |
T |
|
| Q |
251 |
cgcacccgatttattgtaattactacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatat |
350 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||| | || ||| ||||||||||||| |
|
|
| T |
475799 |
cgcacccggtttattgtaattactacatttgtttgactctttgaagggtgacttcttagtacatcttgtacttaggaagttttaccatctttgttaatat |
475700 |
T |
|
| Q |
351 |
ataccatttttgtttctt |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
475699 |
ataccatttttgtttctt |
475682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 27679695 - 27679751
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27679695 |
tttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtatcgac |
27679751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 5909534 - 5909614
Alignment:
| Q |
168 |
tggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatc |
248 |
Q |
| |
|
|||||||| |||| | ||| ||||| |||||||||| || ||| || ||||||||||||||| || |||||||||||||| |
|
|
| T |
5909534 |
tggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatc |
5909614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 34373088 - 34373155
Alignment:
| Q |
160 |
attctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggac |
227 |
Q |
| |
|
|||| |||||| ||||||||| |||||| ||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
34373088 |
attcgttatggaggctaaaagctagtaaggccacatttgtgtacaactatcaaagatgatggtcggac |
34373155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 272 - 368
Target Start/End: Original strand, 6874654 - 6874750
Alignment:
| Q |
272 |
actacattcgtttgactctttcaggagtgacttcttagtacatcttgtacttaggaggcttcaccgtctttgttaatatataccatttttgtttctt |
368 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6874654 |
actacatttgtttgactctttgaggggtgacttcttaatacatcttgtacttaggaggtttcaccgcctttgttaatatataccatttttgtttctt |
6874750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 20543865 - 20543798
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaac |
124 |
Q |
| |
|
||||||||||| ||||| |||| ||||||| |||||||| || || ||||||||||||||||||||||| |
|
|
| T |
20543865 |
atttggttactttgtgtttggg-tggtttggaatgaacgtaataatagactttttaataatatccaaac |
20543798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 56337962 - 56338052
Alignment:
| Q |
161 |
ttctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||||| ||||||||||||| || || ||||| ||||| || |||| |||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
56337962 |
ttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcgac |
56338052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 40483840 - 40483771
Alignment:
| Q |
160 |
attctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccc |
229 |
Q |
| |
|
||||| |||||||||| ||||||| ||| ||||| |||||| |||||| ||| || |||||||||||||| |
|
|
| T |
40483840 |
attctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccc |
40483771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 48029292 - 48029239
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatc |
248 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| | || |||||||||||||| |
|
|
| T |
48029292 |
tttgtgtacggttctcaaagatggtggtcggaccatttgttttgtttgggtatc |
48029239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 53569651 - 53569598
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatc |
248 |
Q |
| |
|
||||||||||||| ||| || ||||||||||||||| | ||||||||||||||| |
|
|
| T |
53569651 |
tttgtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatc |
53569598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 9690064 - 9690008
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||||||| |||| |||||| ||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
9690064 |
tttgtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgac |
9690008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 32348806 - 32348862
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||||||||| ||| || ||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
32348806 |
tttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcgac |
32348862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 43517090 - 43517163
Alignment:
| Q |
56 |
atttggttactatgtgtgtgggatggtttgaaatgaacgcaacaacagactttttaataatatccaaacatccat |
130 |
Q |
| |
|
||||||||||| ||||| ||| ||||||| |||||||| || || ||||||| |||||||||||||||| |||| |
|
|
| T |
43517090 |
atttggttactttgtgtttggt-tggtttggaatgaacgtaataatagactttataataatatccaaacaaccat |
43517163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 27724550 - 27724658
Alignment:
| Q |
143 |
agaaaaagaaaaattatattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttg |
242 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| |||||| |||||| ||| ||| ||||||||| |||||| ||||||||||| ||| | ||||||||| |
|
|
| T |
27724550 |
agaaaaagcaaaatatcattcgttatggtggttaaaagctagtaacaccaattttatgtacggttctcaaagatggtggtcggatcctttactttgtttg |
27724649 |
T |
|
| Q |
243 |
ggtatcgac |
251 |
Q |
| |
|
||||||||| |
|
|
| T |
27724650 |
ggtatcgac |
27724658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 30802246 - 30802328
Alignment:
| Q |
169 |
ggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||| |||| || ||| ||||| ||||||||||||| ||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
30802246 |
ggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcgac |
30802328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 19512060 - 19512005
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcga |
250 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
19512060 |
tttgtgtacggttctcagagatggtggtcggaccctatgaattgtttgggtatcga |
19512005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 7319813 - 7319865
Alignment:
| Q |
199 |
tgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
||||||||| | | || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7319813 |
tgtacggtttttatagatggtggtcggaccctatgatttgtttgggtatcgac |
7319865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 21779 - 21710
Alignment:
| Q |
160 |
attctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccc |
229 |
Q |
| |
|
||||| |||||||||| ||||||| ||| ||||| |||||| |||||| ||| || |||||||||||||| |
|
|
| T |
21779 |
attctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccc |
21710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 64212 - 64297
Alignment:
| Q |
160 |
attctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggt |
245 |
Q |
| |
|
|||||||||||||||| || | | ||| ||||||||||||||||||| ||| || || |||||||| ||| | |||||||||||| |
|
|
| T |
64212 |
attctttatggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttgggt |
64297 |
T |
|
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Target: scaffold0321 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 17672 - 17728
Alignment:
| Q |
195 |
tttgtgtacggttatcaaaggtggtggtcggaccctatgctttgtttgggtatcgac |
251 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
17672 |
tttgtgtacggtactcagagttggtggtcggaccctttgcattgtttgggtatcgac |
17728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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