View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_25 (Length: 312)
Name: NF17828_low_25
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 2855638 - 2855349
Alignment:
| Q |
9 |
gagaagaacttatgtattctaatgaagaacattgaatacatgaaaaaatctattaaaccaaacaaagttgagttgctttcatcattctttaatgtgtttt |
108 |
Q |
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| T |
2855638 |
gagaagaacttatgtattctaatgaagaacattgaatacatgaaaaaatctatcaaaccaaacaaagttgagttgctttcatcattctgtaatgtgtttt |
2855539 |
T |
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| Q |
109 |
cctctgcaataagataaacaagttggcgaaaaaccatgtttgcagatatactcaaaactc-nnnnnnntagttgaatatgtagaattctatgacccttta |
207 |
Q |
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| T |
2855538 |
cctctgcaataagataaacaagttggcgaaaaaccatgtttgcagatatactcaaaactcaaaaaaaatagttgaatatgtagaattctatgacccttta |
2855439 |
T |
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| Q |
208 |
tgcaaggttcaaattttgttaaggtgttattttagtctaagaagatggaaaatatgttattgtgatttgaaagtgtagatgaatgaaggg |
297 |
Q |
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| T |
2855438 |
tgcaaggttcaaattttgttaaggtgttattttagtctaagaagatggaaaatatgttattgtgatttgaaagtgtagatgaatgaaggg |
2855349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2851576 - 2851506
Alignment:
| Q |
9 |
gagaagaacttatgtattctaatgaagaacattgaatacatgaaaaaatctattaaaccaaacaaagttga |
79 |
Q |
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| T |
2851576 |
gagaagaacttatggattctaatgaataatgtagaatatatgaaaaagtctattaaaccaaacaaagttga |
2851506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 10477499 - 10477343
Alignment:
| Q |
73 |
aagttgagttgctttcatcattctttaatgtgttttcctctgcaataagataaacaagttggcgaaaaaccatgtttgcagatatactcaaaactcnnnn |
172 |
Q |
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||||||||||||| |||||||||| | |||| || |||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||||| || |
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| T |
10477499 |
aagttgagttgctatcatcattctgtgatgtcttctcctcttcaataagacaaacaaattggctaaaaaccatgtttgtagatatactcaaaattcaaaa |
10477400 |
T |
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| Q |
173 |
nnntagttgaatatgtagaattctatgaccctttatgcaaggttcaaattttgttaa |
229 |
Q |
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| T |
10477399 |
atacagatgaatatgcagaattctatagccctttttgcaaggttcaaagtttgttaa |
10477343 |
T |
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