View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_26 (Length: 311)
Name: NF17828_low_26
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 46794315 - 46794447
Alignment:
| Q |
8 |
tgagaagaatatgcttaatgcatagagaataatatgattaattaaaatttaaattaattaatcactctgagtttgactgaatcaaagtagcaccgttatt |
107 |
Q |
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| T |
46794315 |
tgagaagaatatgcttaatgcatagagaataatatgattaattaaaatttaaattaattaatcactctgagtttgactgaatcaaagtagcaccgttatt |
46794414 |
T |
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| Q |
108 |
ttgttgaaactttaaagtaaaacttttgtcaaa |
140 |
Q |
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| T |
46794415 |
ttgttgaaactttaaagtaaaacttttgtcaaa |
46794447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 140 - 294
Target Start/End: Original strand, 46794482 - 46794634
Alignment:
| Q |
140 |
acattcacttagttctgagtgttgactgaatcaaagtaacttggtgattttgttgaaactttaaaataaaacttttgtcaaaatcatttgattctctatg |
239 |
Q |
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| T |
46794482 |
acattcacttagttctgagt--tgactgaatcaaagtaatttgatgattttgttgaaactttaaaataaaacttttgtcaaaatcacttgattctctgta |
46794579 |
T |
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| Q |
240 |
attctttcaagctcgttgtgatatcaaacattcacttagttaattacttaccacg |
294 |
Q |
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| T |
46794580 |
attctttcaaggtcgctatgatatcagacattcacttagttaattacttaccacg |
46794634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 46794387 - 46794478
Alignment:
| Q |
161 |
ttgactgaatcaaagtaacttggtgattttgttgaaactttaaaataaaacttttgtcaaaatca-tttgattctctatgattctttcaagc |
251 |
Q |
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| T |
46794387 |
ttgactgaatcaaagtagcaccgttattttgttgaaactttaaagtaaaacttttgtcaaaattacgttgattctatgtgattctttcaagc |
46794478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 46794526 - 46794561
Alignment:
| Q |
105 |
attttgttgaaactttaaagtaaaacttttgtcaaa |
140 |
Q |
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| T |
46794526 |
attttgttgaaactttaaaataaaacttttgtcaaa |
46794561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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