View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17828_low_29 (Length: 300)

Name: NF17828_low_29
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17828_low_29
NF17828_low_29
[»] chr8 (5 HSPs)
chr8 (51-284)||(1802657-1802890)
chr8 (79-209)||(24566507-24566637)
chr8 (103-145)||(32478101-32478142)
chr8 (79-124)||(18414945-18414990)
chr8 (79-171)||(4869331-4869423)
[»] chr2 (2 HSPs)
chr2 (79-171)||(474682-474774)
chr2 (81-159)||(22399105-22399183)
[»] chr7 (2 HSPs)
chr7 (79-171)||(41317017-41317109)
chr7 (79-122)||(45533811-45533854)
[»] chr6 (5 HSPs)
chr6 (85-185)||(1368266-1368366)
chr6 (79-170)||(1375863-1375954)
chr6 (79-170)||(1383611-1383702)
chr6 (70-145)||(17312266-17312341)
chr6 (84-144)||(10384190-10384250)
[»] chr1 (4 HSPs)
chr1 (79-146)||(45682542-45682609)
chr1 (79-147)||(29570686-29570754)
chr1 (85-150)||(30027071-30027136)
chr1 (99-171)||(36901255-36901327)
[»] chr5 (2 HSPs)
chr5 (79-142)||(15259821-15259884)
chr5 (73-147)||(12875816-12875890)
[»] chr4 (3 HSPs)
chr4 (82-149)||(2272577-2272644)
chr4 (79-129)||(31310733-31310783)
chr4 (79-123)||(8358545-8358589)
[»] scaffold0136 (1 HSPs)
scaffold0136 (79-115)||(34354-34390)
[»] chr3 (1 HSPs)
chr3 (79-147)||(29560434-29560502)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 51 - 284
Target Start/End: Original strand, 1802657 - 1802890
Alignment:
Q  51 tataatccattcatttcggttaatttctatatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1802657 tataatccattcatttcggttaatttctatatgaattttcaagtttcaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactg 1802756  T
Q  151 cgagttcacatgaaaataaaattgtagatttaaaggttaaaaatctatacacaaatggatcaaaatgacatgcataaagatatatgaccaaatcattatc 250  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1802757 cgagttcatatgaaaataaaattgtagatttaaaggttaaaaatctatacataaatggatcaaaatgacatgcataaagatatatgaccaaatcattatc 1802856  T
Q  251 taaaattaaatgaatgagtcacatgagtaatttt 284  Q
    |||||||||||||||||||||||||| |||||||    
T  1802857 taaaattaaatgaatgagtcacatgactaatttt 1802890  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 24566637 - 24566507
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaaattgtaga 178  Q
    ||||| || ||||||||| |||| ||| ||||||||  ||||||   ||||  |||||| |||||||| ||| ||| ||||| |||||||||||  ||||    
T  24566637 atatggatgttcaagtttcaaatctaatattcatatacaaacatggctgaaggaccataaatttgaaggctgagagctcacaggaaaataaaatcataga 24566538  T
Q  179 tttaaaggttaaaaatctatacacaaatgga 209  Q
    ||||||| ||||||||| |||  ||||||||    
T  24566537 tttaaagcttaaaaatccatatgcaaatgga 24566507  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 32478101 - 32478142
Alignment:
Q  103 taagattcatatgtaaacataagtgaaaaaccatagatttgaa 145  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  32478101 taagattcatatgcaaacata-gtgaaaaaccatagatttgaa 32478142  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 18414990 - 18414945
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataa 124  Q
    ||||||||||||||||||||||||||| ||| ||||  ||||||||    
T  18414990 atatgaattttcaagttttaaatttaatatttatatacaaacataa 18414945  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 4869423 - 4869331
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaaa 171  Q
    ||||||||||| ||| |||| ||||| |||||||||| ||| ||   |||| || ||||| |||||||| || ||||| ||| ||||||||||    
T  4869423 atatgaattttaaagctttatatttatgattcatatgcaaatatgcatgaagaatcatagttttgaagattgagagttgacaggaaaataaaa 4869331  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 474774 - 474682
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaaa 171  Q
    ||||||||||||||| || |||||||||||||||||| ||||||  |||||  ||||||||||||||||||| ||  ||||| ||||||||||    
T  474774 atatgaattttcaagcttcaaatttaagattcatatgcaaacatgggtgaaggaccatagatttgaagactgagaactcacaggaaaataaaa 474682  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 22399105 - 22399183
Alignment:
Q  81 atgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcac 159  Q
    ||||||||||||| || |||| ||||||||| ||||||||||| |||||| |||||| |||| || |||| ||| ||||    
T  22399105 atgaattttcaagcttcaaatctaagattcaaatgtaaacataggtgaaagaccataaattttaaaactgagaggtcac 22399183  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 41317109 - 41317017
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaaa 171  Q
    ||||| ||||||||| ||||||| ||| ||||||| | |||||| | ||||| |||||||||||||||| || ||| ||||| ||||||||||    
T  41317109 atatgtattttcaagctttaaatctaaaattcataggcaaacatgaatgaaagaccatagatttgaagattgggaggtcacaagaaaataaaa 41317017  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 45533854 - 45533811
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacat 122  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||    
T  45533854 atatgaattttcaaatttcaaatttaagattcatatgcaaacat 45533811  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 1368266 - 1368366
Alignment:
Q  85 attttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaaattgtagatttaaa 184  Q
    ||||||||| ||||||| |||||||||| |  |||||| | ||||| | |||||||||||||| || ||| ||||| |||||||||||  ||||||||||    
T  1368266 attttcaagctttaaatctaagattcatgtcaaaacatgaatgaaagaacatagatttgaagattgtgaggtcacaagaaaataaaatcatagatttaaa 1368365  T
Q  185 g 185  Q
    |    
T  1368366 g 1368366  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 1375863 - 1375954
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaa 170  Q
    ||||| ||||||||||||||||| |||| |||||| | |||||| | ||||| | |||||||||||||| || ||| |||||||||| ||||    
T  1375863 atatgtattttcaagttttaaatctaaggttcataggcaaacatgaatgaaagaacatagatttgaagattgagaggtcacatgaaagtaaa 1375954  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 1383611 - 1383702
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaa 170  Q
    ||||| ||||||||||||||||| |||| |||||| | |||||| | ||||| | |||||||||||||| || ||| |||||||||| ||||    
T  1383611 atatgtattttcaagttttaaatctaaggttcataggcaaacatgaatgaaagaacatagatttgaagattgagaggtcacatgaaagtaaa 1383702  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 17312266 - 17312341
Alignment:
Q  70 ttaatttctatatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaa 145  Q
    ||||||| |||||| |||||||||  || ||| ||| | ||||||| |||||| |||||| |||||||||||||||    
T  17312266 ttaatttttatatggattttcaagcattgaatataaaactcatatgaaaacatgagtgaagaaccatagatttgaa 17312341  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 10384190 - 10384250
Alignment:
Q  84 aattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttga 144  Q
    ||||||||||||| |||| ||| ||||||||| ||||||  ||||| ||||||| ||||||    
T  10384190 aattttcaagtttcaaatctaatattcatatgaaaacatgggtgaagaaccatacatttga 10384250  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 45682542 - 45682609
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaag 146  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||   ||||| |||||||||||||||    
T  45682542 atatgaattttcaagctttaaatataagattcatatgcaaacatggatgaaagaccatagatttgaag 45682609  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 29570754 - 29570686
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaaga 147  Q
    ||||| ||||||||| || ||||  |||||||||||| ||||||| |||||| ||||||||||||||||    
T  29570754 atatgtattttcaagcttcaaatcaaagattcatatgcaaacataggtgaaagaccatagatttgaaga 29570686  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 30027071 - 30027136
Alignment:
Q  85 attttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactg 150  Q
    ||||||||| || |||| ||| ||||||||| ||||||   |||| ||||||||||||||||||||    
T  30027071 attttcaagcttcaaatctaaaattcatatgcaaacatggctgaagaaccatagatttgaagactg 30027136  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 36901327 - 36901255
Alignment:
Q  99 aatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagactgcgagttcacatgaaaataaaa 171  Q
    ||||||| ||||||||| |||  | ||||||| |||||||||||||| |||  ||||||| || |||||||||    
T  36901327 aatttaaaattcatatgaaaatgtgagtgaaagaccatagatttgaatactatgagttcatatcaaaataaaa 36901255  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 15259884 - 15259821
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagattt 142  Q
    ||||||||||| ||  ||||||||| | |||||||||||||||||||||||| || ||||||||    
T  15259884 atatgaatttttaaactttaaattttaaattcatatgtaaacataagtgaaatactatagattt 15259821  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 12875890 - 12875816
Alignment:
Q  73 atttctatatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaaga 147  Q
    |||| |||||| ||||||||| ||||||| ||| |||| |||| |||||||  | ||||||||||||||||||||    
T  12875890 atttttatatggattttcaagctttaaatctaatattcttatgcaaacatagataaaaaaccatagatttgaaga 12875816  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 2272577 - 2272644
Alignment:
Q  82 tgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaagact 149  Q
    ||||||||||||| | |||| ||| | ||||||| |||||| | ||||||||||||||||| ||||||    
T  2272577 tgaattttcaagtatcaaatctaaaagtcatatgaaaacatcactgaaaaaccatagatttaaagact 2272644  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 31310783 - 31310733
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaa 129  Q
    |||||||||||||||| |||||| ||| ||||||||| |||||| ||||||    
T  31310783 atatgaattttcaagtattaaatctaaaattcatatgaaaacatgagtgaa 31310733  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 8358589 - 8358545
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacata 123  Q
    ||||||||||||||| || |||| ||||||||||||| |||||||    
T  8358589 atatgaattttcaagcttcaaatctaagattcatatgcaaacata 8358545  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 34354 - 34390
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatg 115  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  34354 atatgaatttttaagttttaaatttaatattcatatg 34390  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 29560434 - 29560502
Alignment:
Q  79 atatgaattttcaagttttaaatttaagattcatatgtaaacataagtgaaaaaccatagatttgaaga 147  Q
    |||| |||||||||  || ||| |||||||||||||| |||||||  ||||| |||||| |||||||||    
T  29560434 atataaattttcaatcttcaaagttaagattcatatgcaaacatagatgaaagaccatatatttgaaga 29560502  T

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