View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17828_low_30 (Length: 298)

Name: NF17828_low_30
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17828_low_30
NF17828_low_30
[»] chr5 (3 HSPs)
chr5 (13-280)||(454786-455053)
chr5 (67-216)||(470364-470513)
chr5 (67-116)||(27369135-27369184)
[»] chr1 (5 HSPs)
chr1 (74-130)||(47774630-47774686)
chr1 (69-122)||(47744390-47744443)
chr1 (69-122)||(47758773-47758826)
chr1 (69-116)||(47770736-47770783)
chr1 (64-138)||(47626949-47627023)
[»] chr6 (6 HSPs)
chr6 (60-127)||(18979946-18980013)
chr6 (60-127)||(20084242-20084309)
chr6 (60-151)||(20236369-20236460)
chr6 (60-151)||(22206545-22206636)
chr6 (60-138)||(22130353-22130431)
chr6 (60-116)||(22086433-22086489)
[»] scaffold0074 (1 HSPs)
scaffold0074 (60-138)||(49333-49411)
[»] scaffold0007 (1 HSPs)
scaffold0007 (60-138)||(6879-6957)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 454786 - 455053
Alignment:
Q  13 aatataaacatgaattttaagctccaatgaaaagtgaatcacgattgaaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  454786 aatataaacatgaattttaagctccaatgaaaagtgaatcacgattgaaagtatcttaccaaataagaagtaatcaagacttttatttagtacatattca 454885  T
Q  113 taaacaagcattttttcttgttcttccgagcaaaatccatacaaggttaccaagttcctatgttggagtttggctattagcacaatctcatttttaaatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454886 taaacaagcattttttcttgttcttccgagcaaaatccatacaaggttaccaagttcctatgttggagtttggctattagcacaatctcatttttaaatt 454985  T
Q  213 ctattgtgccctgtcctgaagtttttgaaagnnnnnnnacggctatttgtctgctatctaacaaaacc 280  Q
    |||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  454986 ctattgtgccttgtcctgaagtttttgaaagtttttttacggctatttgtctgctatctaacaaaacc 455053  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 470364 - 470513
Alignment:
Q  67 cttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttccgagcaaaatccatacaaggttaccaag 166  Q
    ||||||||||| ||| ||||||||||| ||||| || ||||||||||| | ||||||||||||| |||||||| |||| |||||    || || |||||     
T  470364 cttaccaaataggaaataatcaagactcttattaggcacatattcatatataagcattttttctcgttcttccaagcagaatcctagtaaagtcaccaaa 470463  T
Q  167 ttcctatgttggagtttggctattagcacaatctcatttttaaattctat 216  Q
    || |||||||| || ||||||||||| | ||| ||||||| |||||||||    
T  470464 tttctatgttgaagcttggctattagtaaaatttcattttgaaattctat 470513  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 27369135 - 27369184
Alignment:
Q  67 cttaccaaataagaagtaatcaagacttttatttggtacatattcataaa 116  Q
    ||||||||||| |||||||||||||||||||||||  ||| |||||||||    
T  27369135 cttaccaaatatgaagtaatcaagacttttatttgaaacaaattcataaa 27369184  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 47774686 - 47774630
Alignment:
Q  74 aataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttct 130  Q
    |||| |||||||||||||||||||||||  ||||||||||||| ||||| |||||||    
T  47774686 aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttct 47774630  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 47744390 - 47744443
Alignment:
Q  69 taccaaataagaagtaatcaagacttttatttggtacatattcataaacaagca 122  Q
    |||||||||  || |||||||||||||||||||| ||||||||||| |||||||    
T  47744390 taccaaatataaaataatcaagacttttatttggaacatattcatagacaagca 47744443  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 47758773 - 47758826
Alignment:
Q  69 taccaaataagaagtaatcaagacttttatttggtacatattcataaacaagca 122  Q
    |||||||||  || ||||||||||||||||| || |||||||||||||||||||    
T  47758773 taccaaatataaaataatcaagacttttattcggaacatattcataaacaagca 47758826  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 47770783 - 47770736
Alignment:
Q  69 taccaaataagaagtaatcaagacttttatttggtacatattcataaa 116  Q
    ||||||||| |||||||||||||||||||||||  ||| |||||||||    
T  47770783 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaa 47770736  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 47627023 - 47626949
Alignment:
Q  64 tatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttc 138  Q
    |||| ||||||||| ||||| |||||||||||| || || ||||||||||| || || || |||||||| |||||    
T  47627023 tatcataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttc 47626949  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 18979946 - 18980013
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttt 127  Q
    ||||||||| ||||||||  ||| ||||||||||||| ||||| ||||||||||||| ||| ||||||    
T  18979946 aaagtatctaaccaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtattttt 18980013  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 20084242 - 20084309
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttt 127  Q
    ||||| ||| ||||||||  ||| ||||||||||||| ||||| ||||||||||||| ||| ||||||    
T  20084242 aaagtgtctaaccaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtattttt 20084309  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 20236369 - 20236460
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttccgagcaaaatcca 151  Q
    ||||| ||| ||||||||  |||||||||||||| || || || ||| ||||||||| ||| ||||| |||||||||||   ||||||||||    
T  20236369 aaagtgtctaaccaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatcca 20236460  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 22206636 - 22206545
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttccgagcaaaatcca 151  Q
    ||||| ||| ||||||||  |||||||||||||| || || || ||| ||||||||| ||| ||||| |||||||||||   ||||||||||    
T  22206636 aaagtgtctaaccaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatcca 22206545  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 22130353 - 22130431
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttc 138  Q
    ||||| ||| ||||||||  |||||||||||||| || || || ||| ||||||||| ||| ||||| |||||||||||    
T  22130353 aaagtgtctaaccaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttc 22130431  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 22086433 - 22086489
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaa 116  Q
    ||||| || |||||||||| ||||||||||||||||| || |  |||||||||||||    
T  22086433 aaagtgtcataccaaataaaaagtaatcaagacttttgttggaaacatattcataaa 22086489  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 49411 - 49333
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttc 138  Q
    ||||| ||| ||||||||  ||| ||||||||||||| || || ||| ||||||||| ||| ||||| |||||||||||    
T  49411 aaagtgtctaaccaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttc 49333  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 6957 - 6879
Alignment:
Q  60 aaagtatcttaccaaataagaagtaatcaagacttttatttggtacatattcataaacaagcattttttcttgttcttc 138  Q
    ||||| ||| ||||||||  ||| ||||||||||||| || || ||| ||||||||| ||| ||||| |||||||||||    
T  6957 aaagtgtctaaccaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttc 6879  T

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