View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_32 (Length: 284)
Name: NF17828_low_32
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 14705800 - 14705552
Alignment:
| Q |
18 |
gcagagatgcactggattctttagggctggttcgatattgctgcaggcgcatgcttatgacccatgttgaacttattgataagctactgaatcacaatcg |
117 |
Q |
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| T |
14705800 |
gcagagatgcactggattctttagggctggttcgatattgctgcaggcgcatgcttatgacccatgttgaacttattgataagctactgaattacaatcg |
14705701 |
T |
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| Q |
118 |
taatttccgatccctatactattctttgcgattgtgtgtcaattttatgatatcattgggtttgtaatgatcgtacattcatttggttgcagctctggaa |
217 |
Q |
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| T |
14705700 |
taatttctgaaccctatacttttctttgcgattgtgtgtcaattttatgatatcattgggtttgtaatgatcgtacattcatttggttgcagctctggaa |
14705601 |
T |
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| Q |
218 |
aagcacggtgccaactaaggattctaaggaactaaagacgaccaagatg |
266 |
Q |
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| T |
14705600 |
aagcacggtgccaactaagggttctaaggaactaaagacgaccaagatg |
14705552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 14713923 - 14713685
Alignment:
| Q |
20 |
agagatgcactggattctttagggctggttcgatattgctgcaggcgcatgcttatgacccatgttgaacttattgataagctactgaatcacaatcgta |
119 |
Q |
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| T |
14713923 |
agagatgcactggatgctttggggttggtccgatattgctgcaggcgtatgcttatgacccatgttgaccttatcgagaagctactgaattacaatagta |
14713824 |
T |
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| Q |
120 |
atttccgatccctatactattctttgcgattgtgtgtcaattttatgatatcattgggtttgtaatgatcgtacattcatttggttgcagctctggaaaa |
219 |
Q |
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| T |
14713823 |
atttctgatctctatatcattctat--gtatgtgtgtcaattttct-atatcactgggtttgtaatgatcaaacattcatttggttgcagctatggaaaa |
14713727 |
T |
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| Q |
220 |
gcacggtgccaactaaggattc-taaggaactaaagacgacc |
260 |
Q |
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| T |
14713726 |
gcatgaagccaattaaggagtcttaaggaactgcagacgacc |
14713685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 28889743 - 28889571
Alignment:
| Q |
18 |
gcagagatgcactggattctttagggctggttcgatattgctgcaggcgcatgcttatgacccatgttgaacttattgataagctactgaatcacaatcg |
117 |
Q |
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||||||||||||||||| | || || |||||||| ||||| ||||||||||||||||||||||||||||| || ||||| || ||| |||| | || | |
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| T |
28889743 |
gcagagatgcactggatgcgttgggtctggttcggtattgttgcaggcgcatgcttatgacccatgttgatctcattgagaaactattgaactataacag |
28889644 |
T |
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| Q |
118 |
taatttccgatccctatactattctttgcgattgtgtgtcaattttatgatatcattgggtttgtaatgatcgtacatt |
196 |
Q |
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| T |
28889643 |
taagttctgatccctatatgattct------gtgtgtgtaaattttctaatgtcattgggtttgtattgatcatacatt |
28889571 |
T |
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