View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17828_low_35 (Length: 276)

Name: NF17828_low_35
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17828_low_35
NF17828_low_35
[»] chr2 (7 HSPs)
chr2 (58-261)||(15009053-15009256)
chr2 (58-260)||(15009954-15010163)
chr2 (1-58)||(15009289-15009346)
chr2 (10-40)||(15014274-15014304)
chr2 (10-40)||(15024799-15024829)
chr2 (10-38)||(15003146-15003174)
chr2 (13-49)||(15010398-15010434)
[»] chr3 (2 HSPs)
chr3 (62-157)||(41954057-41954153)
chr3 (81-254)||(49722944-49723118)
[»] chr6 (2 HSPs)
chr6 (58-128)||(3340349-3340419)
chr6 (62-157)||(34222156-34222252)
[»] chr1 (1 HSPs)
chr1 (200-261)||(11777405-11777466)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 58 - 261
Target Start/End: Complemental strand, 15009256 - 15009053
Alignment:
Q  58 tccgctgataatgacaaagtaattgtgagaatccacaattttttcttctatccagttacggatcattttttggcttcgtcacatgcatttcaactataat 157  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15009256 tccgctgataatgacaaagtaattgtgagaatccacagttttttcttctatccagttacggatcattttttggcttcgtcacatgcatttcaactataat 15009157  T
Q  158 cgatcccgtatttggtcaccttgtcgcgctggacataattaagttgataaaaggaaaaggtattaaagttgggatcatcctcataaagaactgcacaccc 257  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15009156 cgataccgtatttggtcaccttgtcgcgctggacataattaagttgataaaaggaaaaggtattaaagttgggatcatcctcataaagaactgcacaccc 15009057  T
Q  258 tatg 261  Q
    ||||    
T  15009056 tatg 15009053  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 260
Target Start/End: Complemental strand, 15010163 - 15009954
Alignment:
Q  58 tccgctgataatgacaaagtaattgtgagaa---tccacaattttttcttctatccagttacggatcattttttggcttcgtcacatgcatttcaactat 154  Q
    |||||||||||||||||||||||||| ||||   |||||  ||||||||| |||||||||||  ||||||||||||||||  |||| |||||| ||| ||    
T  15010163 tccgctgataatgacaaagtaattgtcagaagaatccactgttttttcttatatccagttacatatcattttttggcttcaacacacgcattttaacaat 15010064  T
Q  155 aatcgat----cccgtatttggtcaccttgtcgcgctggacataattaagttgataaaaggaaaaggtattaaagttgggatcatcctcataaagaactg 250  Q
    |||  ||    | || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||    
T  15010063 aattaattggtctcggatttgatcaccttgtcgcgctggacataattaagttggtaaaaggaaaaggtgttgaagttgggatcatactcataaagaactg 15009964  T
Q  251 cacaccctat 260  Q
    |||| |||||    
T  15009963 cacatcctat 15009954  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15009346 - 15009289
Alignment:
Q  1 tcccggactaaatgcaagaccatttgaactttcacatgtataaggcctaaagaaattt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15009346 tcccggactaaatgcaagaccatttgaactttcacatgtataaggcctaaagaaattt 15009289  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 15014304 - 15014274
Alignment:
Q  10 aaatgcaagaccatttgaactttcacatgta 40  Q
    |||||||||||||||||||||||||||||||    
T  15014304 aaatgcaagaccatttgaactttcacatgta 15014274  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 15024829 - 15024799
Alignment:
Q  10 aaatgcaagaccatttgaactttcacatgta 40  Q
    |||||||||||||||||||||||||||||||    
T  15024829 aaatgcaagaccatttgaactttcacatgta 15024799  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 15003146 - 15003174
Alignment:
Q  10 aaatgcaagaccatttgaactttcacatg 38  Q
    |||||||||||||||||||||||||||||    
T  15003146 aaatgcaagaccatttgaactttcacatg 15003174  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 15010434 - 15010398
Alignment:
Q  13 tgcaagaccatttgaactttcacatgtataaggccta 49  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  15010434 tgcaagaccatttgaattttcaaatgtataaggccta 15010398  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 41954057 - 41954153
Alignment:
Q  62 ctgataatgacaaagtaattgtgagaatccacaattttttcttctatccagttacggatca-ttttttggcttcgtcacatgcatttcaactataat 157  Q
    |||||| |||||||| || ||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||  ||||||| ||| ||||    
T  41954057 ctgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacggatcatttttttggcttcatcacgagcatttcgactttaat 41954153  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 49723118 - 49722944
Alignment:
Q  81 tgtgagaatccacaattttttcttctatccagttacggatcat-tttttggcttcgtcacatgcatttcaactataatcgatcccgtatttggtcacctt 179  Q
    |||||||||||| | | |||| | ||||||||||||||||||| ||||||||||| ||||  || |||  |||| | | | || || ||||| |||| ||    
T  49723118 tgtgagaatccaaagtcttttttcctatccagttacggatcatatttttggcttcatcacgcgcgttttgactaaacttggtctcggatttgttcacttt 49723019  T
Q  180 gtcgcgctggacataattaagttgataaaaggaaaaggtattaaagttgggatcatcctcataaagaactgcaca 254  Q
     ||  |||||||| || | ||||||||||||| ||||||||| |||| |||| ||||||| |||| |||| ||||    
T  49723018 atcatgctggacaaaaatcagttgataaaaggcaaaggtattgaagtggggagcatcctcgtaaaaaactacaca 49722944  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 3340419 - 3340349
Alignment:
Q  58 tccgctgataatgacaaagtaattgtgagaatccacaattttttcttctatccagttacggatcatttttt 128  Q
    |||||||||| |||||||| || |||||||||||||||| |||  ||||||||||||||||||||||||||    
T  3340419 tccgctgatattgacaaaggaaatgtgagaatccacaatctttctttctatccagttacggatcatttttt 3340349  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 34222156 - 34222252
Alignment:
Q  62 ctgataatgacaaagtaattgtgagaatccacaattttttcttctatccagttacggatca-ttttttggcttcgtcacatgcatttcaactataat 157  Q
    |||||| |||||||| || |||||||||||||||| |||  |||||| ||| ||||||||| |||||||||||| ||||  ||||||| ||||||||    
T  34222156 ctgatattgacaaaggaaatgtgagaatccacaatctttctttctattcaggtacggatcatttttttggcttcatcacgcgcatttcgactataat 34222252  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 11777466 - 11777405
Alignment:
Q  200 gttgataaaaggaaaaggtattaaagttgggatcatcctcataaagaactgcacaccctatg 261  Q
    |||||||||||| ||| ||||| |||| |||| |||||||||||| |||| |||||| ||||    
T  11777466 gttgataaaaggcaaatgtattgaagtagggagcatcctcataaataactacacaccttatg 11777405  T

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