View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_37 (Length: 265)
Name: NF17828_low_37
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_37 |
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| [»] scaffold0323 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14248504 - 14248256
Alignment:
| Q |
1 |
gggtatgagattcatatggcacaccgcgatttgggtcatttggaattttaggaataatatcattttaaaaaatggtggtatagaggtggaagtagtagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14248504 |
gggtatgagattcatatggcacaccgcgatttgggtcatttggaattttaggaataatatcattttcaaaaatggtggtatagaggtggaagtagtagcg |
14248405 |
T |
|
| Q |
101 |
gaggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248404 |
gaggatattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttg |
14248305 |
T |
|
| Q |
201 |
gagttttgcgcggctgagttttggttgctgttgcggttctggttggttc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248304 |
gagttttgcgcggctgagttttggttgctgttgcggttctggttggttc |
14248256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 13311750 - 13311856
Alignment:
| Q |
29 |
atttgggtcatttggaattttaggaataatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagt |
128 |
Q |
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|||||||| ||||| ||||||| ||| || |||||||| || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
13311750 |
atttgggttatttgaaattttatgaacaacatcatttttaacaatggtggtatagaggtggaagatgtagttgaggaaattaaaatgttgtcgtggaagt |
13311849 |
T |
|
| Q |
129 |
ggagctt |
135 |
Q |
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| T |
13311850 |
ggagctt |
13311856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 30366686 - 30366828
Alignment:
| Q |
102 |
aggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttgg |
201 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| ||| | |
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| T |
30366686 |
aggaaatgaaaatgttgtcgtggaagtggagcttatctcggttgaagattcagccgtgtttgtattatgaaaggcggtggaatccaagatggtgccttcg |
30366785 |
T |
|
| Q |
202 |
agttttgcgcggctgagttttggttgctgttgcggttctggtt |
244 |
Q |
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| T |
30366786 |
tgttttgcgcagctgagttttggttactgttgcggttctggtt |
30366828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 50192275 - 50192056
Alignment:
| Q |
12 |
tcatatggcacaccgcgatttgggtcatttggaattttaggaataatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaa |
111 |
Q |
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||||||||||||| | |||||||| ||||||||||||||||| || ||||| || || ||||| || ||||||||||||| || ||| |||||||| |
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| T |
50192275 |
tcatatggcacacaactatttgggttatttggaattttaggaacaacatcatcttcaacaatggcggcatagaggtggaagatgttttggacgaaattaa |
50192176 |
T |
|
| Q |
112 |
aatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttggagttttgcgc |
211 |
Q |
| |
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|||| |||| ||||||||||| || || | |||| | ||| | ||| ||||||||||||||||| |||||||||| ||||| ||||| |||||||| |
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| T |
50192175 |
aatgctgtcttggaagtggagtttggctagattgaggattcatctgtgcttgtattatgaatggcgatggaatccgaaatggtgccttggtattttgcgc |
50192076 |
T |
|
| Q |
212 |
ggctgagttttggttgctgt |
231 |
Q |
| |
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| T |
50192075 |
gcctgagtttctgttgctgt |
50192056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 30762163 - 30762026
Alignment:
| Q |
71 |
aatggtggtatagaggtggaagtagtagcggaggaaattaaaatg-ttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattat |
169 |
Q |
| |
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||||| |||||||||||||||| ||| | | |||| ||||||| | || ||||||| ||||| ||||| || |||||| ||| |||||||||| ||| |
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| T |
30762163 |
aatggcggtatagaggtggaagaagtggtgcaggacattaaaaaggttatcgtggatttggagtttatcgaggctgaaaattcaaccgtgtttgttctat |
30762064 |
T |
|
| Q |
170 |
gaatggcggtggaatccgagatggtatcttggagtttt |
207 |
Q |
| |
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||||| |||||||||| || |||| ||||||||||| |
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| T |
30762063 |
gaatgacggtggaatctgaagtggtgccttggagtttt |
30762026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 29298822 - 29298911
Alignment:
| Q |
41 |
tggaattttaggaataatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagtgg |
130 |
Q |
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| T |
29298822 |
tggaattgtaggaataatatcattttcaaaaatggtggtgtagaggtggaggaagtagtggaggatatcaaaatgttgtcttggaagtgg |
29298911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 18319980 - 18319883
Alignment:
| Q |
104 |
gaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttgg |
201 |
Q |
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|||||| |||||||||||||||||||||||||| | ||||||| | |||||| ||||||| | ||||||| | ||||||||||| |||| |||||| |
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| T |
18319980 |
gaaattcaaatgttgtcgtggaagtggagcttagcgaggttgaagattcagccatgtttgttctttgaatggagatggaatccgaggtggtgtcttgg |
18319883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 41304660 - 41304828
Alignment:
| Q |
26 |
gcgatttgggtcatttggaattttaggaataatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtgga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| || ||||| | |||||||| | | | |||||| || ||| |||||||||||| |
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| T |
41304660 |
gcgatttgggtcatttggaattttaggaacaatataatttttaataatggaaatgcggaggtggactaattggtggaggatataaaactgttgtcgtgga |
41304759 |
T |
|
| Q |
126 |
agtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggt |
194 |
Q |
| |
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| ||||| |||| ||||| |||| | | ||||||||| ||||| |||| ||||||||||||||||| |
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| T |
41304760 |
aatggagtctatcccggttaaaaattaaatcgtgtttgttctatgattggctgtggaatccgagatggt |
41304828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 10947 - 11090
Alignment:
| Q |
71 |
aatggtggtatagaggtggaagtagtagcggaggaaattaaaatg-ttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattat |
169 |
Q |
| |
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||||| |||||||||||||||| | | | |||||| ||||||| | || ||||||| ||||| ||||| || |||||| ||| |||||||||| ||| |
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| T |
10947 |
aatggcggtatagaggtggaagaattggtggaggacattaaaaaggttatcgtggatttggagtttatcgaggctgaaaattcaaccgtgtttgttctat |
11046 |
T |
|
| Q |
170 |
gaatggcggtggaatccgagatggtatcttggagttttgcgcgg |
213 |
Q |
| |
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|||||||||||||||| || |||| ||||||||||| ||||| |
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| T |
11047 |
gaatggcggtggaatctgaagtggtcccttggagttttacgcgg |
11090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 1337788 - 1337930
Alignment:
| Q |
29 |
atttgggtcatttggaattttaggaataatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagt |
128 |
Q |
| |
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||||||| ||||||||| |||||||||||||| || || |||| |||||||| ||| ||| ||| | ||| ||||| ||||||||||||||||||| |
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| T |
1337788 |
atttgggccatttggaagacgaggaataatatcatatttaataatgccggtatagaagtgcaagaagtggtggaagaaatcaaaatgttgtcgtggaagt |
1337887 |
T |
|
| Q |
129 |
ggagcttatctcggttgaaaactcagccgtgtttgtattatga |
171 |
Q |
| |
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||| |||||||| |||||| ||| |||||||| |||||| |
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| T |
1337888 |
ggaatttatctcgactgaaaattcaagtgtgtttgttttatga |
1337930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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