View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17828_low_40 (Length: 251)

Name: NF17828_low_40
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17828_low_40
NF17828_low_40
[»] chr8 (5 HSPs)
chr8 (6-233)||(11828092-11828322)
chr8 (82-233)||(23097378-23097529)
chr8 (5-100)||(1493714-1493809)
chr8 (1-60)||(23097348-23097407)
chr8 (32-77)||(23097301-23097346)
[»] chr7 (2 HSPs)
chr7 (5-79)||(47344075-47344146)
chr7 (121-209)||(47343990-47344072)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 11828092 - 11828322
Alignment:
Q  6 cagagtaagaaaactctggactcggcggcgatggagct---gaataactcct---ggacgatgaagacgaagacgaagaactcggcgatggagccgaata 99  Q
    ||||||||||||||||||||||||| ||||||||| ||   |||||||||||   |||| |||||||||||||||||||      |||||||||||||||    
T  11828092 cagagtaagaaaactctggactcggtggcgatggaactctggaataactcctcctggaccatgaagacgaagacgaaga------cgatggagccgaata 11828185  T
Q  100 actcctggacgaagatgatttagagaatgcacttcctcccattctacctccggatggtgctgctaaggatgtgtttggattgtacgtagtcaat---aga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||   |||    
T  11828186 actcctggacgaagatgatttagagaatgcacttcctcccattctacctccagatggtgctgctaaggacgtgtttggattgtacgtagtcaatagaaga 11828285  T
Q  197 attcctgttaataatatcgcggctaccacgggttttc 233  Q
    |||||| |||||||||||||||||||| |||||||||    
T  11828286 attcctattaataatatcgcggctaccgcgggttttc 11828322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 23097378 - 23097529
Alignment:
Q  82 cggcgatggagccgaataactcctggacgaagatgatttagagaatgcacttcctcccattctacctccggatggtgctgctaaggatgtgtttggattg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23097378 cggcgatggagccgaataactcctggacgaagatgatttagagaatgcacttcctcccattctacctccggatggtgctgctaaggacgtgtttggattg 23097477  T
Q  182 tacgtagtcaatagaattcctgttaataatatcgcggctaccacgggttttc 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23097478 tacgtagtcaatagaattcctattaataatatcgcggctaccacgggttttc 23097529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 1493809 - 1493714
Alignment:
Q  5 gcagagtaagaaaactctggactcggcggcgatggagctgaataactcctggacgatgaagacgaagacgaagaactcggcgatggagccgaataa 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1493809 gcagagtaagaaaactctggactcggcggcgatggaaccgaataactccaggacgatgaagacgaagacgaagaactcggcgatggagccgaataa 1493714  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23097348 - 23097407
Alignment:
Q  1 cgaggcagagtaagaaaactctggactcggcggcgatggagctgaataactcctggacga 60  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23097348 cgaggcagagtaagaaaactctggactcggcggcgatggagccgaataactcctggacga 23097407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 23097301 - 23097346
Alignment:
Q  32 ggcgatggagctgaataactcctggacgatgaagacgaagacgaag 77  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||    
T  23097301 ggcgatggaaccgaataactccaggacgatgaagacgaagacgaag 23097346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 47344146 - 47344075
Alignment:
Q  5 gcagagtaagaaaactctggactcggcggcgatggagctgaataactcctggacgatgaagacgaagacgaagaa 79  Q
    ||||||||||||||| |||||||||| |   ||||| | ||||||||||| ||||||||||| ||||||||||||    
T  47344146 gcagagtaagaaaaccctggactcggtg---atggaaccgaataactcctagacgatgaagaggaagacgaagaa 47344075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 47344072 - 47343990
Alignment:
Q  121 agagaatgcacttcctcccattctacctccggatggtgctgctaaggatgtgtttggattgtacgtagtcaatagaattcctgttaata 209  Q
    ||||||||  |||||||| ||||||||||| ||||   |||||||||| |||||||||||||||    |||||||||||||| ||||||    
T  47344072 agagaatgatcttcctccaattctacctccagatg---ctgctaaggacgtgtttggattgtac---atcaatagaattcctattaata 47343990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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