View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_42 (Length: 250)
Name: NF17828_low_42
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 11380386 - 11380213
Alignment:
| Q |
11 |
gaagaagcaacatgtaacttcaatgaatcgttaaagatcggtgaaggtggatacggaaagatatttaaaggtatccttcgtcacactgacgtggcgataa |
110 |
Q |
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| T |
11380386 |
gaagaagcaacatgtaacttcaatcaatcgttaaagattggtgaaggtggatacggaaagatatttaaaggtatccttcgtcacactgacgtggcgataa |
11380287 |
T |
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| Q |
111 |
aaatgttgagccccaacagtactcaaggaccctcagaatttcaacaggaggtaagatggttcgagtttgattga |
184 |
Q |
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| T |
11380286 |
aagtgctgagccccaacagtactcaaggaccctcagaatttcaacaggaggtaagatggttcgagttcgattga |
11380213 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 29362173 - 29362276
Alignment:
| Q |
11 |
gaagaagcaacatgtaacttcaatgaatcgttaaagatcggtgaaggtggatacggaaagatatttaaaggtatccttcgtcacactgacgtggcgataa |
110 |
Q |
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|||||||||||| ||||||| ||| ||| |||||||||| ||||||||||| ||||| |||| ||||||| | || |||||||| || ||||| |||| |
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| T |
29362173 |
gaagaagcaacaagtaactttaatccatctctaaagatcggagaaggtggatatggaaatatatataaaggtctactccgtcacaccgaagtggctataa |
29362272 |
T |
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| Q |
111 |
aaat |
114 |
Q |
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|||| |
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| T |
29362273 |
aaat |
29362276 |
T |
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