View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_45 (Length: 242)
Name: NF17828_low_45
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1895689 - 1895913
Alignment:
| Q |
1 |
ctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatataacttagtaaatgtttgaattga |
100 |
Q |
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| T |
1895689 |
ctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatataacttagtaaatgtttgaattga |
1895788 |
T |
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| Q |
101 |
cggtgagtttaacagaatcacgctacaagaattttggcaacaaggtgctaccaagattttgtcaaattcaccgtgattttaacaaaagccacccttgatt |
200 |
Q |
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| T |
1895789 |
cggtgagtttgacagaatcacgctataagaattttggcaacaaggtgctaccaagattttctcaaattcaccgtgattttaacaaaatccacccttgatt |
1895888 |
T |
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| Q |
201 |
aatttctttatgttttgcatttcat |
225 |
Q |
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| T |
1895889 |
aatttctttatgttttgcatttcat |
1895913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 1905528 - 1905706
Alignment:
| Q |
1 |
ctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatataacttagtaaatgtttgaattga |
100 |
Q |
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| T |
1905528 |
ctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtatataacttggtgtctgtttggattga |
1905627 |
T |
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| Q |
101 |
cggtgagtttaacagaatcacgc----tacaagaattttggcaacaaggtgctaccaagattttgtcaaattcaccgtg |
175 |
Q |
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| T |
1905628 |
cggtgagtttgacaaaatcacgcatgttgcgaagattttggcaacacggtgcttccacgattttgtcaaattcaccgtg |
1905706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 17240698 - 17240731
Alignment:
| Q |
88 |
atgtttgaattgacggtgagtttaacagaatcac |
121 |
Q |
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| T |
17240698 |
atgtttgaattgacggtgagtttgacagaatcac |
17240731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 7873192 - 7873144
Alignment:
| Q |
74 |
atataacttagtaaatgtttgaattgacggtgagtttaacagaatcacg |
122 |
Q |
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| T |
7873192 |
atataacttagtacatgtttggattgacggtgagtttaacataatcacg |
7873144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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