View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_49 (Length: 236)
Name: NF17828_low_49
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1358558 - 1358338
Alignment:
| Q |
1 |
caatttatgtatattgaatttctaaagggctgatgcttacaaattggtcaaatgtagaaattaatggcaatgacctgaaagaagtaaggtgaggcaagtg |
100 |
Q |
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| T |
1358558 |
caatttatgtatattgaatttctaaagggctgatgcttacaaattggtcaaatgtagaaattaatggcaatgacctgaaagaattaaggtgaggcaagtg |
1358459 |
T |
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| Q |
101 |
aacggatatgccctacacacaaacaaataacaacctttttgtcctatctccacaagttgaatcaaaggtttttatttcaattcaaatgaatgtttactta |
200 |
Q |
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| T |
1358458 |
aacagatatgccctacacacaaacaaataacaacctttttgtcctatctccacaagttgaatcaaaggtttttatttcaattcaaatgaatgtttactta |
1358359 |
T |
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| Q |
201 |
attacttctaaacattcctat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
1358358 |
attacttctaaacattcctat |
1358338 |
T |
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