View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_5 (Length: 534)
Name: NF17828_low_5
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 25204597 - 25204081
Alignment:
| Q |
17 |
tcaaaccgaggcaagaacacagaatttgggaactttgattgagaagcatggttgccattcttgcaaacaactgatgtcacattagcatgcacagacgcca |
116 |
Q |
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| T |
25204597 |
tcaaaccgaggcaagaacacagaattcgggaacttcaattgagaatcatggttgccattcttgcaaacaactgatgtcacattagcatgcacagacgcca |
25204498 |
T |
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| Q |
117 |
ttttgatgcagaactacacaaagtcaagaagttttgcatatcaaattttcaaacaactgagatggcatgcatataaaatgtgtaaatatgtctaatctgt |
216 |
Q |
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| T |
25204497 |
ttttgatgcagaactacacaaagtcaagaagttttgcatatcaaattttcaaacaactgagatggcatgcatataaaatgtgtaaatatatctaatctgt |
25204398 |
T |
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| Q |
217 |
atgcacagatgtgaatagattctctgccaagaaattaatttaaaatacaaactatagagttcacaaatcacttggctaatcaattttgtgcttttg-nnn |
315 |
Q |
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| T |
25204397 |
atgcacagatgtgaatagattctctgccaagaaattaatttaaaatacaaactctatagttcacaaatcacttggctaatcaattttgtgcttttgaaaa |
25204298 |
T |
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| Q |
316 |
nnnnnntccatatcaaaacccctaacaatgatcatagttttcatcgtacttattcagcaaaatttaatgtactcggtgtcggtgtccaacactgtcaagt |
415 |
Q |
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| T |
25204297 |
aaaaaatccatatcaaaacccctaacaatgatcatagttttcatcatacttattcagcaaaatttaatgtactcggtgtcggtgtccaacactgtcaagt |
25204198 |
T |
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| Q |
416 |
gttagacattagagacacattcaatctaaagtgtcggtgctacatagtttatgcatnnnnnnnnnttggaatggttcaaaactaaaatggaaaaacagag |
515 |
Q |
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| T |
25204197 |
gttagacattagagacacattcaatctaaagtgtcggtgctacatagtttctgcat--aaaaaaattggaatggttcaaaactaaaatggaaaaacagag |
25204100 |
T |
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| Q |
516 |
acactctcttatgaaacac |
534 |
Q |
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| T |
25204099 |
acactctcttatgaaacac |
25204081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 25193285 - 25193022
Alignment:
| Q |
17 |
tcaaaccgaggcaagaacacagaatttgggaactttgattgagaagcatggttgccattcttgcaaacaactgatgtcacattagcatgcacagacgcca |
116 |
Q |
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|||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25193285 |
tcaaaccgaggcaaaaatgtagaattcgggaactttgattgagaagcatggttgccattcttgcaaacaactgatgtcacattagcatgcaccgacgcca |
25193186 |
T |
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| Q |
117 |
ttttgatgcagaactacacaaagtcaagaagttttgcatatcaaattttcaaacaactgagatggcatgcatataaaatgtgtaaatatgtctaatctgt |
216 |
Q |
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| | ||||||||||| || ||| |||| ||||| |||||||| || ||||||| |||||||| || |||| |||||||||| | | ||| | |
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| T |
25193185 |
tctcgatgcagaactgca-aaattcaa----ttttgattatcaaatgtttaaacaac-----tggcatgcttacaaaaagtgtaaatatatgttatcaat |
25193096 |
T |
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| Q |
217 |
atgcacagatgtgaatagattctctg-ccaagaaattaatttaaaatacaaactatagagttcacaaatcactt |
289 |
Q |
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| T |
25193095 |
atacataaatatgaatagattctatgtcaaaaaaattaatttcaaatacaaactctagagttcacaaattactt |
25193022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 461
Target Start/End: Complemental strand, 16698705 - 16698671
Alignment:
| Q |
427 |
gagacacattcaatctaaagtgtcggtgctacata |
461 |
Q |
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| T |
16698705 |
gagacacattcaatctaaagtgtcagtgctacata |
16698671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 22016070 - 22016103
Alignment:
| Q |
430 |
acacattcaatctaaagtgtcggtgctacatagt |
463 |
Q |
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| T |
22016070 |
acaccttcaatctaaagtgtcggtgctacatagt |
22016103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Original strand, 47126341 - 47126378
Alignment:
| Q |
430 |
acacattcaatctaaagtgtcggtgctacatagtttat |
467 |
Q |
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| T |
47126341 |
acaccttcaatctaaagtgtcggtgatacatagtttat |
47126378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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