View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_54 (Length: 218)
Name: NF17828_low_54
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 25204104 - 25203927
Alignment:
| Q |
14 |
cagagacactctcttatgaaacactcacttttgatttctaatggttgaataatgaacagaatgaattttgatctcctatttgtaagagtatgaaaactaa |
113 |
Q |
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| T |
25204104 |
cagagacactctcttatgaaacactcacttttgatttctaatggttgaataatgaacagagtgaattttgatctcctatttgtaagagtatgaaaactaa |
25204005 |
T |
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| Q |
114 |
aaggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagt |
191 |
Q |
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| T |
25204004 |
aaggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagt |
25203927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 25203784 - 25203715
Alignment:
| Q |
122 |
catgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagt |
191 |
Q |
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|||||||| ||||||||||||||| || ||||||||| |||| |||||||||||||||||||||||| |
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| T |
25203784 |
catgcaataaaccaagtgtcaagaggaaagcatgcaacaaaccaattgttattcatgcaacaaactaagt |
25203715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 25203915 - 25203874
Alignment:
| Q |
150 |
tacatgcaacatgccaaatgttattcatgcaacaaactaagt |
191 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25203915 |
tacatgcaacatgccaaatgtcattcatgcaacaaactaagt |
25203874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 25203466 - 25203422
Alignment:
| Q |
134 |
caagtgtcaagataaatacatgcaacatgccaaatgttattcatg |
178 |
Q |
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| T |
25203466 |
caagtgtcaacatgaatacacgcaacaagccaaatgttattcatg |
25203422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 18483176 - 18483110
Alignment:
| Q |
115 |
aggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaa |
181 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||| || | ||| |||||| ||||||| |
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| T |
18483176 |
aggaatacatgcaacaaaccaagtgtcaagataaatacatgcagcaagacaagtgttatccatgcaa |
18483110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 35711806 - 35711856
Alignment:
| Q |
131 |
aaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaa |
181 |
Q |
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|||||| |||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
35711806 |
aaccaaatgtcaagaggaatacatacaacaagccaaatgttattcatgcaa |
35711856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 39290068 - 39290144
Alignment:
| Q |
115 |
aggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagt |
191 |
Q |
| |
|
|||| ||||||||| | ||||||||||||| |||||||||||||| | || |||||| ||||||| ||||||||| |
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| T |
39290068 |
aggaatacatgcaacaagccaagtgtcaagagaaatacatgcaacaagttaagtgttatccatgcaataaactaagt |
39290144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 3343604 - 3343535
Alignment:
| Q |
122 |
catgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagt |
191 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||| || ||||||||||| ||||||| |||| |||| |
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| T |
3343604 |
catgcaataagccaagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaaccaagt |
3343535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 39898223 - 39898251
Alignment:
| Q |
163 |
ccaaatgttattcatgcaacaaactaagt |
191 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39898223 |
ccaaatgttattcatgcaacaaactaagt |
39898251 |
T |
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