View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17828_low_6 (Length: 534)
Name: NF17828_low_6
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 52087703 - 52087213
Alignment:
| Q |
14 |
agaagacgttccacaatcagcgattgattccatggtgaagcaagtgaattcccttatctctcttgaagagccacttcacttgactatgggtccgttggta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52087703 |
agaagacgttccacaatcagcgattgattccatggtgaagcaagtgaattcccttatctctcttgaagagccacttcacttaactatgggtccgttggta |
52087604 |
T |
|
| Q |
114 |
agtattcaatcctccaattccatttcatctttcaatttcactcacatgatccatagtagattcagatccaaggaagatctccatgcctatgcagtgcacc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087603 |
agtattcaatcctccaattccatttcatctttcaatttcactcacatgatccatagtagattcagatccaaggaagatctccatgcctatgcagtgcacc |
52087504 |
T |
|
| Q |
214 |
ctacacacttggcagtcatcaaagataacaagcctatagttgatgaaaccatggctcttaattgggtcaccgaggttcacgataacgacttggttctaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087503 |
ctacacacttggcagtcatcaaagataacaagcctatagttgatgaaaccatggctcttaattgggtcaccgaggttcacgataacgacttggttctaca |
52087404 |
T |
|
| Q |
314 |
acatggatctgctatgcaagttttgttcttcaagttgaaggagggtttgggagaagaagttaaagatgaggtgttgaagggtataagtggaattcaacat |
413 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087403 |
acatggatctgctatgcaagttgtgttcttcaagttgaaggagggtttgggagaagaagttaaagatgaggtgttgaagggtataagtggaattcaaca- |
52087305 |
T |
|
| Q |
414 |
gaaaaagctgttcagtttaattgtggggaaaatttctcttctggtagagctaaagggttctctattggttccctttcagttttttcaagtttaagggaat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
52087304 |
-----------tcagtttaattgtggggaaaatttctctcctggtagagctaaagggttctctattggttccctttcggtttttccaagtttaagggaat |
52087216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University