View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_7 (Length: 528)
Name: NF17828_low_7
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 71 - 512
Target Start/End: Complemental strand, 15630021 - 15629580
Alignment:
| Q |
71 |
ttcaaaatgtaaagaatcatcatacctcgagatacatgtccattgcatggtaaagctcatcacaagaatccctagcagaatctggaagagctgtagcaag |
170 |
Q |
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| T |
15630021 |
ttcaaaatggaaagaatcattatacctcaagatacatgtccattgcatggtaaagctcatcacaagaatccctagcagaatctggaagagctgttgcaag |
15629922 |
T |
|
| Q |
171 |
agccaaaaacttcgaagtttttaaacaaggatcaggtgcaatttcagctatatacaaatctattaagctagcaactttcctcatccgaacgggagcaacg |
270 |
Q |
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| T |
15629921 |
agccaaaaactttgaagtttttaaacaaggatcaggtgcaatttcagctatatacaaatctattaagctagcaactttcctcatccgaacgggagcaacg |
15629822 |
T |
|
| Q |
271 |
gcaccagttccttgccgcaggaacgctttcaaaaatctcagaacaaggttcacatcatataagtagtttattccatagggagatggaacaagcaaattgt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629821 |
gcaccagttccttgccgcaggaacgctttcaaaaatctcagaacaaggttcacatcatataagtagtttattccatagggagatggaacaagcaaattgt |
15629722 |
T |
|
| Q |
371 |
ccaatgttacttgatccaattgtgaaccaatcataatctccaacttattcctactacatttacttatgttcaagcacaaagtcacccgaagaatcccaaa |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629721 |
ccaatgttacttgatccaattgtgaaccaatcataatctccaacttattcctactacatttacttatgttcaagcacaaagtcacccgaagaatcccaaa |
15629622 |
T |
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| Q |
471 |
taatgtcttgaacgaaacagaactccggtctatttcgtaatg |
512 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||||| |
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| T |
15629621 |
taatgttttgaaagaaacagaattccggtctatttcgtaatg |
15629580 |
T |
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